http://blog.gmane.org/gmane.comp.misc.ontology.protege.general hourly 1 1901-01-01T00:00+00:00 http://gmane.org/img/gmane-25t.png http://gmane.org http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20774 <pre>======================================================================== The 13th International Conference on Web Information System Engineering (WISE 2012) http://www.wise2012.cs.ucy.ac.cy November 28th-30th, 2012, Paphos, Cyprus ======================================================================== *** EXTENDED DEADLINE: 22nd June 2012 *** *** CALL FOR PAPERS AND RESEARCH DEMOS *** The aim of this thirteenth edition of the conference series on Web Information Systems Engineering is to provide an international forum for researchers, professionals, and industrial practitioners to share their knowledge in the rapidly growing area of Web technologies, methodologies and applications. Previous WISE conferences were held in Hong Kong, China (2000), Kyoto, Japan (2001), Singapore (2002), Roma, Italy (2003), Brisbane, Australia (2004), New York, USA (2005), Wuhan, China (2006), Nancy, France (2007), Auckland, New</pre> Announcements 2012-05-25T10:23:45 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20773 <pre>Hi everyone, First, I apologize for cross posting. I am not certain which list is best for my questions. I am using P4 alpha with the Tabbed Subclasses plugin written by Nick Drummond in conjunction with a driver written with the OWL API (v2.2.0). The purpose of the driver is to extract a branch (or branches) into a new OWL file. I use Perl afterwards to remove any classes outside the branch, as well as outward pointing restrictions from classes within the branch. By removing these axioms, a clean branch is produced. Nick's plugin is excellent because I can quickly copy a hierarchy of classes based on a focus node, and provide this list of classes to the program for extraction. Not only that, but rdfs:subClassOf and rdf:Descriptions (found in equivalent classes of Thesaurus) are properly represented in Tabbed Subclasses (and naturally P4). The method I wrote long ago (line 212, getDescendants), using a focus node as a parameter, does not perform exactly the same as the plugin implementation. For ex</pre> Wynne, Robert (NIH/NCI) [C] 2012-05-24T22:35:09 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20770 <pre>Hi guys, I have been trying to store the ontology into the MySQL database via one kind of ontology storing method, everything is Ok except for an encoding problem. My native language is chinese, so there are several concepts described in chinese in the ontology file, while, during the process of storing, the chinese characters cannot show normally in tables, all chinese characters are showed as the characters '?'. The error message is: Exception in thread "main" com.hp.hpl.jena.shared.JenaException: org.xml.sax.SAXParseException: Content is not allowed in prolog. at com.hp.hpl.jena.rdf.model.impl.RDFDefaultErrorHandler.fatalError(RDFDefaultErrorHandler.java:45) at com.hp.hpl.jena.rdf.arp.impl.ARPSaxErrorHandler.fatalError(ARPSaxErrorHandler.java:35) at com.hp.hpl.jena.rdf.arp.impl.XMLHandler.warning(XMLHandler.java:225) at com.hp.hpl.jena.rdf.arp.impl.XMLHandler.fatalError(XMLHandler.java:255) at org.apache.xerces.util.ErrorHandlerWrapper.fatalError(Unknown Source) at org.apache.xerces.impl.XMLErro</pre> Wentao Zhou 2012-05-22T10:17:04 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20766 <pre>Hello, I really don't know where ask about this, sorry for any inconvenience. I'm using Protégé 3.4.8 and OWLViz don't function with accent characters (OWLViz build 17). With OWLViz build 18, in Protégé 4, the problem apparently is solved. There's no way to use de last build (18) of OWLViz on Protégé 3.4.8? Or some other way to fix this? Ontoviz have the same problem, don't accept accent characters. Thanks for any feedback. </pre> Fabio Aiub Sperotto 2012-05-19T02:45:42 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20765 <pre>--------------Apologies for cross posting-------------- ********************************************************************************* Call for Tutorial Proposals http://ekaw2012.ekaw.org/node/63 at the International Conference on Knowledge Engineering and Knowledge Management a 2012 http://www.ekaw.org/ ********************************************************************************* Introduction ------------ The International Conference on Knowledge Engineering and Knowledge Management (EKAW) is concerned with all aspects of eliciting, acquiring, modeling and managing knowledge, as well as its role in the construction of knowledge-intensive systems and services for the semantic web, knowledge management, e-business, natural language processing, and intelligent information integration. The focus of the 18th edition of EKAW will be on "Knowledge Engineering and Knowledge Management that matters". Besides a research track, EKAW will host a number of tutorials on topics related to the theme of the confere</pre> Claudia d'Amato 2012-05-16T10:06:47 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20764 <pre>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ DILS 2012 Call for Participation ++++++++++++ ++++++++++++ Registration is open: http://www.cvent.com/d/9cq14w/1Q Deadline for posters and demos: May 31, 2012 ++++++++++++ ++++++++++++ 8th International Conference on Data Integration in the Life Sciences College Park, MD, USA, June 28-29, 2012 http://sites.google.com/site/webdils2012 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ------------------- About the Conference ------------------- Applications of data integration in the life sciences have started to provide significant results. For example, the eMERGE Network has recently demonstrated that combining phenotype information extracted from electronic medical records with genotype information in order to study th</pre> Olivier Bodenreider 2012-05-15T18:44:51 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20761 <pre> (apologies for cross-posting) ... (please distribute) ------------------------------------------------------- Call for Papers &gt;&gt; OBML 2012 &lt;&lt; Sep 27-28, Dresden, Germany Submission deadline: Aug 01, 2012 [1] https://wiki.imise.uni-leipzig.de/Gruppen/OBML/Workshops/2012 ------------------ Fourth Workshop of Ontologies in Biomedicine and Life Sciences (OBML 2012) Goals of OBML ------------- The workshop series on "Ontologies in Biomedicine and Life Sciences" (OBML workshop) was initiated by the working group for OBML of the German Society for Computer Science in 2009. The OBML workshop aims to bring together scientists who are working on all areas of ontologies applied to biomedicine and the life sciences to exchange ideas, discuss new results, start collaborations and to initiate new projects. The OBML workshop is held annually and deals with all aspects of biomedical ontologies as well as additional "hot" t</pre> frank.loebe< at >informatik.uni-leipzig.de 2012-05-11T15:46:33 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20760 <pre>======================================================== 6th Int'l Workshop on Modular Ontologies (WoMO) Graz, Austria, July 24, 2012 held in conjunction with FOIS 2012 --- Final Call for Papers --- ======================================================== +++ EXTENDED SUBMISSION DEADLINE: May 18, 2012 +++ ======================================================== +++ Following requests, we have extended the submission deadline to MAY 18, 2012. +++ INVITED SPEAKERS: * Thomas Eiter, Vienna University of Technology, Austria Title TBA * Luciano Serafini, Fondazione Bruno Kessler, Trento, Italy Multi context logics: a formal support for structuring knowledge and beliefs (Tentative title) http://www.informatik.uni-bremen.de/~ts/womo2012 MODULARITY, studied for years in software engineering, allows mechanisms for easy and flexible reuse, generalization, structuring, maintenance, design patterns, and comprehension. In formal and applied ontology, modularity is </pre> WoMO 2012 2012-05-10T21:53:08 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20758 <pre>We are pleased to announce availability of the first beta build of Protege 3.5: http://protege.stanford.edu/download/registered.html#p3.5 The main focus of the 3.5 series is the SWRLTab's [1] support of the Drools [2] rule engine, thus providing a completely free and open source solution for executing SWRL rules in Protege-OWL. Release notes ------------------- - Collection of minor bug fixes for the SWRLTab. - Removed the Algernon, UMLS tab, and WordNet tab plug-ins from the distribution, as they are no longer maintained. Other helpful links -------------------------- Online version of these release notes: http://protegewiki.stanford.edu/wiki/Protege_3.5_Beta_Release_Notes Release notes archive: http://protegewiki.stanford.edu/wiki/Protege_Release_Notes Protege 3 documentation: http://protegewiki.stanford.edu/wiki/Protege3UserDocs Protege on Facebook: https://www.facebook.com/pages/Protege-Project/136205016405270 Protege on Twitter: https://twitter.com/#!/protegeproject &lt;https://twitter.com/#%2</pre> Jennifer Vendetti 2012-05-09T22:58:22 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20756 <pre> *** Call for Papers *** The 15th IEEE International Conference on Computational Science and Engineering (IEEE CSE 2012) http://www.cse2012.cs.ucy.ac.cy/ The 10th IEEE/IFIP International Conference on Embedded and Ubiquitous Computing (IEEE/IFIP EUC 2012) http://www.euc2012.cs.ucy.ac.cy/ 3-5 October 2012, Paphos, Cyprus *** EXTENDED DEADLINE: 10th June 2012 *** CSE 2012 The Computational Science and Engineering area has earned prominence through advances in electronic and integrated technologies beginning in the 1940s. Current times are very exciting and the years to come will witness a proliferation in the use of various advanced computing systems. It is increasingly becoming an emerging and promising discipline in shaping future research and development activities in academia and industry, ranging from engineering, science, finance, economics, arts and hum</pre> Announcements 2012-05-09T09:22:59 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20753 <pre> HI, I have different ontology and I would merge these in a single one. So, can I, starting from one ontology, import the others directly? thank you! roberta _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> rperro88< at >hotmail.com 2012-05-09T08:04:22 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20752 <pre>I hope this is the right place to post this question. The question is related to the DataMaster plugin. Is it possible to exclude columns when importing a table? I have a CLOB column that I don't want to incude. Thanks a lot, Vessie _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Bakalov, Vesselina D. 2012-05-08T20:21:49 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20749 <pre>Hello all, I am trying to install WebProtege on UNIX CentOS 64bit (2.6.18-164.11.1.el5 x86_64). I downloaded Webprotege_2011.05.28.war.zip and tried Local mode and External Server Mode with Protege 3.4.6. Both didn't work. Protege 3.4.6 server works fine using ./protege or run_protege.bat command. But http://xxx.xxx.xxx/webprotege/WebProtege.html always says "There was an error retrieving ontologies from server. Please try again". And I could not login using webprotege user and password. I changed the protege.properties file load.ontologies.from.protege.server=false/true based on the mode I used. Also, I figured out I need to change the history.projects.reopen path to the example project location on my UNIX. The java on my UNIX server is Java 1.6.0 (java version "1.6.0" OpenJDK Runtime Environment (build 1.6.0-b09) OpenJDK 64-Bit Server VM (build 1.6.0-b09, mixed mode)). It runs Apache web server. Is this the reason I can't get it work? Do I have to install Tomcat? I appreciate if you could help. </pre> Suzhi Wang 2012-05-08T15:16:09 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20748 <pre> *** Call for Workshop Proposals *** *** Deadline: 18th May 2012 *** 13th International Conference on Web Information Systems Engineering (WISE 2012) http://www.wise2012.cs.ucy.ac.cy November 28th-30th, 2012, Paphos, Cyprus You are invited to submit a workshop proposal as part of the WISE 2012 conference. Proposals should include the following information: * the workshop (co-)chair(s) with a brief bio as well as key workshop officers * the goals and content of the workshop and the list of topics for which contributions are sought * proposed length of the workshop, its structure, and anticipated number of attendees WISE2012  will provide administrative support in the areas of registration, hotel meeting rooms, and publication of the workshop proceedings (in Springer). Workshop proposals should be e-mailed in a PDF to Armin Haller (email: Armin.Haller&lt; at &gt;csiro.au) or Zhisheng Huang (email: huang.z</pre> Announcements 2012-05-08T13:50:15 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20747 <pre>======================================================================== The 13th International Conference on Web Information System Engineering (WISE 2012) http://www.wise2012.cs.ucy.ac.cy November 28th-30th, 2012, Paphos, Cyprus ======================================================================== *** EXTENDED DEADLINE: 22nd June 2012 *** *** CALL FOR PAPERS AND RESEARCH DEMOS *** The aim of this thirteenth edition of the conference series on Web Information Systems Engineering is to provide an international forum for researchers, professionals, and industrial practitioners to share their knowledge in the rapidly growing area of Web technologies, methodologies and applications. Previous WISE conferences were held in Hong Kong, China (2000), Kyoto, Japan (2001), Singapore (2002), Roma, Italy (2003), Brisbane, Australia (2004), New York, USA (2005), Wuhan, China (2006), Nancy, France (2007), Auckland, New</pre> Announcements 2012-05-08T13:19:34 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20746 <pre>------------- Apologies for multiple cross-postings --------------------- Call for Papers DEADLINE EXTENDED TO May 18th, 2012 The Sixth IEEE International Conference on Semantic Computing (IEEE ICSC 2012) September 19th- 21st, 2012 Palermo, Italy http://www.ieee-icsc.org The field of Semantic Computing addresses the derivation of semantic information from content and the connection of semantics to knowledge, where "content" may be anything including video, audio, text, processes, services, hardware, networks, etc. The Sixth IEEE International Conference on Semantic Computing (ICSC 2012) continues to foster the growth of a new research community. The conference builds on the success of the past ICSC conferences as an international forum for researchers and practitioners to present research that advances the state of the art and practice of Semantic Computing, as well as identifying emerging research topics and defining the future of the field. The event is located in Palermo, Italy on the Piazza</pre> Claudia d'Amato 2012-05-08T11:16:03 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20742 <pre> I try to do this bat, that code have an Exception in thread "main" java.lang.OutOfMemoryError: Java heap space. Waht's happen hear. String ns= "http://www.owl-ontologies.com/suelos.owl#"; OntModel model = null; model = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM_RULE_INF); java.io.InputStream in = FileManager.get().open("D://suelos.owl"); if (in == null) { throw new IllegalArgumentException("Archivo no encontrado"); } model.read(in, ""); ExtendedIterator it = model.listNamedClasses(); String s = ""; while(it.hasNext()){ OntClass c = (OntClass)it.next(); s = c.getComment(null); System.out.println(s); } -- View this message in context: http://protege-ontology-editor-knowledge-acquisition-system.136.n4.nabble.com/What-happen-with-this-Jena-have-a-bug-tp4616679.</pre> Jorge 2012-05-08T06:24:42 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20741 <pre> I try to do this bat, that code have an Exception in thread "main" java.lang.OutOfMemoryError: Java heap space. Waht's happen hear. String ns= "http://www.owl-ontologies.com/suelos.owl#"; OntModel model = null; model = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM_RULE_INF); java.io.InputStream in = FileManager.get().open("D://suelos.owl"); if (in == null) { throw new IllegalArgumentException("Archivo no encontrado"); } model.read(in, ""); ExtendedIterator it = model.listNamedClasses(); String s = ""; while(it.hasNext()){ OntClass c = (OntClass)it.next(); s = c.getComment(null); System.out.println(s); } -- View this message in context: http://protege-ontology-editor-knowledge-acquisition-system.136.n4.nabble.com/I-have-problem-wiht-this-tp4616675.html Sent from the Protege Discussion mailing list archive at Nabble.com. ______________________________________</pre> Jorge 2012-05-08T06:22:39 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20740 <pre>Hi All, I'm novice user in Protege application. Is it possible to import a XSD file (XML schema) to OWL? Is there a Protege plugin? Thank you, Flavio. _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Flavio Seixas 2012-05-08T00:53:08 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20738 <pre>======================================================== 6th Int'l Workshop on Modular Ontologies (WoMO) Graz, Austria, July 24, 2012 held in conjunction with FOIS 2012 --- Third Call for Papers --- ======================================================== Submission deadline: May 11, 2012 ======================================================== INVITED SPEAKERS: * Thomas Eiter, Vienna University of Technology, Austria Title TBA * Luciano Serafini, Fondazione Bruno Kessler, Trento, Italy Multi context logics: a formal support for structuring knowledge and beliefs (Tentative title) http://www.informatik.uni-bremen.de/~ts/womo2012 MODULARITY, studied for years in software engineering, allows mechanisms for easy and flexible reuse, generalization, structuring, maintenance, design patterns, and comprehension. In formal and applied ontology, modularity is central to reducing the complexity of designing and understanding ontologies, and to facilitatin</pre> WoMO 2012 2012-05-07T15:06:25 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20737 <pre> VISITING ACADEMIC POSITIONS DEPARTMENT OF COMPUTER SCIENCE UNIVERSITY OF CYPRUS The Department of Computer Science at the University of Cyprus has a number of vacancies for Visiting Academics at the ranks of Lecturer, Assistant, Associate, and Full Professor. Applications are being accepted in all areas, but we are particularly interested in: Theoretical Computer Science / Security / Visual Computing / Computer Games / Human Computer Interaction / Software Engineering / Computer Networks / Data Management A visiting appointment is for one semester (Spring Semester: 15 Jan - 31 May; Fall Semester: 1 Sept - 31 Dec), but can be renewed for up to four semesters. Applicants should hold a Ph.D. in a relevant subject and BE FLUENT IN GREEK (both of these requirements are mandatory). The monthly gross salary for these positions is (in EUR): Visiting Academic Professor: 3.845,84 EUR Visiting Academic Associate Professor: 3.456,98</pre> Announcements 2012-05-07T14:38:12 Search the mailing list at Gmane query http://search.gmane.org/?group=$group=gmane.comp.misc.ontology.protege.general