http://blog.gmane.org/gmane.comp.apache.uima.devel hourly 1 1901-01-01T00:00+00:00 http://gmane.org/img/gmane-25t.png http://gmane.org http://comments.gmane.org/gmane.comp.apache.uima.devel/14473 <pre>Peter Klügl created UIMA-2412: --------------------------------- Summary: TextMarker IDE's formatter deletes arguments of language elements Key: UIMA-2412 URL: https://issues.apache.org/jira/browse/UIMA-2412 Project: UIMA Issue Type: Bug Components: TextMarker Reporter: Peter Klügl Assignee: Peter Klügl TextMarker IDE's formatter is deleting some arguments of language elements. This was observed for first column of MARKTABLE action, but is probably occurring also for other actions or conditions. Create unit tests for the formatter functionality and cover all language elements. -- This message is automatically generated by JIRA. If you think it was sent incorrectly, please contact your JIRA administrators: https://issues.apache.org/jira/secure/ContactAdministrators!default.jspa For more information on JIRA, see: http://www.atlassian.com/software/jira </pre> Peter Klügl (JIRA 2012-05-25T13:48:23 http://comments.gmane.org/gmane.comp.apache.uima.devel/14471 <pre>Peter Klügl created UIMA-2411: --------------------------------- Summary: TextMarker TRANSFER action not working Key: UIMA-2411 URL: https://issues.apache.org/jira/browse/UIMA-2411 Project: UIMA Issue Type: Bug Components: TextMarker Reporter: Peter Klügl Assignee: Peter Klügl Priority: Minor The TRANSFER action is not working at all because it uses an old method that should have been removed. Fix the action and delete the method. -- This message is automatically generated by JIRA. If you think it was sent incorrectly, please contact your JIRA administrators: https://issues.apache.org/jira/secure/ContactAdministrators!default.jspa For more information on JIRA, see: http://www.atlassian.com/software/jira </pre> Peter Klügl (JIRA 2012-05-25T13:34:23 http://comments.gmane.org/gmane.comp.apache.uima.devel/14465 <pre>Hello everybody, we would like to propose the contribution of uimaFIT to Apache UIMA. uimaFIT provides an API that facilitates using UIMA embedded in other Java code, which is also helpful for unit tests. It also provides context injection features such as annotations on class member fields which in UIMA component which are initialized from the UIMA context. uimaFIT already is a proven product on its own and has an established user base (cf. [1] [2] [3] [4] [5] [6] [7] [8]). But we think that having uimaFIT hosted with Apache UIMA would allow and encourage more people to use it and we could get more feedback that can be used to further improve uimaFIT. It has been quite some time that we last talked about uimaFIT. Since then, I did another iteration over the documentation of uimaFIT in its wiki. I don't claim it to be perfect, but I think it is more ordered now and contains less duplicate information. Also, I finally see a possibility time-wise to address whatever work may be necessary in the contribution</pre> Richard Eckart de Castilho 2012-05-25T06:22:08 http://comments.gmane.org/gmane.comp.apache.uima.devel/14463 <pre>Tommaso Teofili created UIMA-2410: ------------------------------------- Summary: Create the UIMA-BSP component in sandbox Key: UIMA-2410 URL: https://issues.apache.org/jira/browse/UIMA-2410 Project: UIMA Issue Type: Task Components: Sandbox Reporter: Tommaso Teofili as discussed create a UIMA-BSP component in sandbox for hosting BSP model based UIMA components -- This message is automatically generated by JIRA. If you think it was sent incorrectly, please contact your JIRA administrators: https://issues.apache.org/jira/secure/ContactAdministrators!default.jspa For more information on JIRA, see: http://www.atlassian.com/software/jira </pre> Tommaso Teofili (JIRA 2012-05-24T21:23:09 http://comments.gmane.org/gmane.comp.apache.uima.devel/14455 <pre>We're planning to update the uima-as svn directory layout today to make it be "conventional" by moving the content of the uima-as project up one level in the directory tree, and then removing the special "workarounds" that are present for the current "flat" structure. This will make its layout conform to existing Maven standards, and also all the other aggregation projects in the UIMA SVN directory. A consequence of this will be that after the move is complete, people will need to re-checkout the trunk to pick up the change. We'll post again when the move is complete, and also when we've fixed the build so it builds again :-) -Marshall </pre> Marshall Schor 2012-05-24T13:44:37 http://comments.gmane.org/gmane.comp.apache.uima.devel/14454 <pre>Joern Kottmann created UIMA-2409: ------------------------------------ Summary: CasCopier.copyCasView should be able to copy into a view with a different name Key: UIMA-2409 URL: https://issues.apache.org/jira/browse/UIMA-2409 Project: UIMA Issue Type: Improvement Components: Core Java Framework Reporter: Joern Kottmann Priority: Trivial Fix For: 2.4.1SDK The CasCopier should be able to copy a CAS view into a new CAS and giving this new CAS view a different name. A common use case is to copy a view of multi view CAS into a new single view CAS. -- This message is automatically generated by JIRA. If you think it was sent incorrectly, please contact your JIRA administrators: https://issues.apache.org/jira/secure/ContactAdministrators!default.jspa For more information on JIRA, see: http://www.atlassian.com/software/jira </pre> Joern Kottmann (JIRA 2012-05-24T13:21:54 http://comments.gmane.org/gmane.comp.apache.uima.devel/14447 <pre>See &lt;https://builds.apache.org/job/UIMA-SDK/212/changes&gt; Changes: [schor] [UIMA-2406] fix, plus add test case (failed before fix, works after) ------------------------------------------ [...truncated 3178 lines...] AU uima-docbook-tutorials-and-users-guides/src/docbook/images/tutorials_and_users_guides/tug.aae/image002.jpg AU uima-docbook-tutorials-and-users-guides/src/docbook/images/tutorials_and_users_guides/tug.aae/image020.jpg AU uima-docbook-tutorials-and-users-guides/src/docbook/images/tutorials_and_users_guides/tug.aae/image012.jpg AU uima-docbook-tutorials-and-users-guides/src/docbook/images/tutorials_and_users_guides/tug.aae/image030.jpg AU uima-docbook-tutorials-and-users-guides/src/docbook/images/tutorials_and_users_guides/tug.aae/image004.jpg AU uima-docbook-tutorials-and-users-guides/src/docbook/images/tutorials_and_users_guides/tug.aae/image022.jpg AU uima-docbook-tutorials-and-users-guides/src/docbook/images/tutorials_and_users_guides/tug.aae</pre> Apache Jenkins Server 2012-05-23T20:21:13 http://comments.gmane.org/gmane.comp.apache.uima.devel/14445 <pre>Marshall Schor created UIMA-2408: ------------------------------------ Summary: better xml formatting when serializing Key: UIMA-2408 URL: https://issues.apache.org/jira/browse/UIMA-2408 Project: UIMA Issue Type: Improvement Components: Core Java Framework Affects Versions: 2.4.0SDK Reporter: Marshall Schor Assignee: Marshall Schor Priority: Minor Fix For: 2.4.1SDK Improve the indenting done when serializing xml. It should handle a mixed case, where some indenting comes from deserializing the XML in the preserve-comments-and-whitespace mode (which was recently added), and other indenting is "computed" for parts of the object which do not have existing DOM nodes (because, for instance, they were programmatically added, as opposed to being created via a deserialization process). Also, fix the wizards that create the initial "blank" versions to properly indent the templates t</pre> Marshall Schor (JIRA 2012-05-23T17:33:40 http://comments.gmane.org/gmane.comp.apache.uima.devel/14442 <pre>Hi all, the current copyCasView method can only copy a view from CAS a to CAS b while maintaining the view name. It would be nice to be able to pass in a new view name. I am proposing to add this method: CasCopier.copyCasView(CAS aSrcCasView, String, aDestCasView, boolean aCopySofa) Any opinions? Jörn </pre> Jörn Kottmann 2012-05-23T10:09:41 http://comments.gmane.org/gmane.comp.apache.uima.devel/14439 <pre>Hi all, following recent thread about UIMA and BSP [1] I'd like to create a sandbox component for such BSP based UIMA components. WDYT? Regards, Tommaso [1] : http://markmail.org/thread/ivdzqb6w677p2374 </pre> Tommaso Teofili 2012-05-23T08:12:28 http://comments.gmane.org/gmane.comp.apache.uima.devel/14435 <pre>This is mainly a re-release of the uima-build-helper-maven-plugin, which had the wrong version released - see https://issues.apache.org/jira/browse/UIMA-2407 The re-release of this updates it to version 4. This, in turn, required the parent-pom to be updated to depend on the new version 4. The parent-pom already had a -SNAPSHOT dependency on the next to-be-released version of uima-build-resources (which had changes to add trademark symbols on first usage, into our docs). So that needed to be released as well (you can't release something with a SNAPSHOT dependency). So, I've staged all 3 components to https://repository.apache.org/content/repositories/orgapacheuima-116/ The svn tags are: https://svn.apache.org/repos/asf/uima/build/tags/parent-pom-4 https://svn.apache.org/repos/asf/uima/build/tags/uima-build-helper-maven-plugin-4 https://svn.apache.org/repos/asf/uima/build/tags/uima-build-resources-4 Please vote on release: [ ] +1 OK to release [ ] 0 Don't care [ ] -1 Not ok to release, becaus</pre> Marshall Schor 2012-05-22T17:15:42 http://comments.gmane.org/gmane.comp.apache.uima.devel/14429 <pre>Marshall Schor created UIMA-2407: ------------------------------------ Summary: uima-build-helper-maven-plugin at wrong level in maven central Key: UIMA-2407 URL: https://issues.apache.org/jira/browse/UIMA-2407 Project: UIMA Issue Type: Bug Components: Build, Packaging and Test Affects Versions: 3-uima-build-helper Reporter: Marshall Schor Assignee: Marshall Schor Fix For: 4-uima-build-helper -- This message is automatically generated by JIRA. If you think it was sent incorrectly, please contact your JIRA administrators: https://issues.apache.org/jira/secure/ContactAdministrators!default.jspa For more information on JIRA, see: http://www.atlassian.com/software/jira </pre> Marshall Schor (JIRA 2012-05-22T14:51:42 http://comments.gmane.org/gmane.comp.apache.uima.devel/14426 <pre>We have a build helper custom plugin that used to work on Jenkins, but seems to have stopped working. The plugin fails to create a subdirectory in the Jenkins .m2 repository. I suspect this is some kind of a permissions issue. You can see the evidence in this raw log output from our last failed build: [1] https://builds.apache.org/job/UIMA-AS/123/consoleText For this run, we moved (temporarily) the .repository to the WORKSPACE, so we could see it - it's here: [2] https://builds.apache.org/job/UIMA-AS/ws/.repository/org/apache/uima/ The failing java code is attempting to create the previous directories for a new file in the .m2 repo, using: targetFile.getParentFile().mkdirs(); where targetFile (from [1] is "/home/jenkins/jenkins-slave/workspace/UIMA-AS/.repository/org/apache/uima/uimaj/2.4.0/uimaj-2.4.0-bin.zip" ThegetParentFile() should strip off the last piece, and make the new directories "uimaj/2.4.0/" under .../org/apache/uima. But it fails (no reason given). You can see that it fails in</pre> Marshall Schor 2012-05-21T19:56:50 http://comments.gmane.org/gmane.comp.apache.uima.devel/14425 <pre>Michael Payne created UIMA-2406: ----------------------------------- Summary: CasToInlineXml.generateXML throws ClassCastException when JCas is initialized in CAS Key: UIMA-2406 URL: https://issues.apache.org/jira/browse/UIMA-2406 Project: UIMA Issue Type: Bug Affects Versions: 2.3.1AS Reporter: Michael Payne I get the following exception when calling getJCas() on a CAS and passing the CAS to CasToInlineXml.generateXML(). If I pass in a CAS before calling getJCas() it works fine. ..java.lang.ClassCastException: org.apache.uima.jcas.cas.StringArray incompatible with org.apache.uima.cas.impl.StringArrayFSImpl at org.apache.uima.util.CasToInlineXml.getFeatureAttributes(CasToInlineXml.java:251) at org.apache.uima.util.CasToInlineXml.generateXML(CasToInlineXml.java:159) at org.apache.uima.util.CasToInlineXml.generateXML(CasToInlineXml.java:95) -- This message is automatically generated by JIRA. If you think it was sent</pre> Michael Payne (JIRA 2012-05-21T18:59:41 http://comments.gmane.org/gmane.comp.apache.uima.devel/14423 <pre>See &lt;https://builds.apache.org/job/UIMA-AS/org.apache.uima$uima-as/123/&gt; ------------------------------------------ projectStarted org.apache.uima:uima-as:2.4.0-SNAPSHOT Downloading: http://repo1.maven.org/maven2/org/apache/maven/plugins/maven-javadoc-plugin/2.8/maven-javadoc-plugin-2.8.pom [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Apache UIMA-AS: uima-as 2.4.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ Downloaded: http://repo1.maven.org/maven2/org/apache/maven/plugins/maven-javadoc-plugin/2.8/maven-javadoc-plugin-2.8.pom (16 KB at 6.1 KB/sec) Downloading: http://repo1.maven.org/maven2/org/apache/maven/plugins/maven-javadoc-plugin/2.8/maven-javadoc-plugin-2.8.jar Downloaded: http://repo1.maven.org/maven2/org/apache/maven/plugins/maven-javadoc-plugin/2.8/maven-javadoc-plugin-2.8.jar (283 KB at 355.7 KB/sec) Downloading: http://repo</pre> Apache Jenkins Server 2012-05-21T18:07:25 http://comments.gmane.org/gmane.comp.apache.uima.devel/14422 <pre>Benjamin Rampe created UIMA-2405: ------------------------------------ Summary: Website sidebar: 'ASF Sponsors' w/ typo in URL, 'Thanks' working duplicate of 'ASF Sponsors' Key: UIMA-2405 URL: https://issues.apache.org/jira/browse/UIMA-2405 Project: UIMA Issue Type: Bug Components: Website Reporter: Benjamin Rampe Priority: Minor Both bugs in section ASF in left menu: 1. Typo in 'ASF Sponsors'-URL http://apache.org/foundataion/thanks.html -&gt; http://www.apache.org/foundation/thanks.html 2. 'Thanks' link is a (working) duplicate of 'ASF Sponsors' http://www.apache.org/foundation/thanks.html -- This message is automatically generated by JIRA. If you think it was sent incorrectly, please contact your JIRA administrators: https://issues.apache.org/jira/secure/ContactAdministrators!default.jspa For more information on JIRA, see: http://www.atlassian.com/software/jira </pre> Benjamin Rampe (JIRA 2012-05-21T14:08:41 http://comments.gmane.org/gmane.comp.apache.uima.devel/14419 <pre>Jerry Cwiklik created UIMA-2404: ----------------------------------- Summary: UIMA-AS session inactivity timer thread doesnt cleanup jms correctly Key: UIMA-2404 URL: https://issues.apache.org/jira/browse/UIMA-2404 Project: UIMA Issue Type: Bug Components: Async Scaleout Reporter: Jerry Cwiklik Priority: Minor Fix For: 2.4.0AS Session inactivity timer pops by default after 30 minutes of inactivity and it closes JMS connection to a broker. Current code first closes the connection and subsequently tries to close all JMS Sessions associated with the connection. It should be other way around, first close Sessions and than the Connection. -- This message is automatically generated by JIRA. If you think it was sent incorrectly, please contact your JIRA administrators: https://issues.apache.org/jira/secure/ContactAdministrators!default.jspa For more information on JIRA, see: http://www.atlassi</pre> Jerry Cwiklik (JIRA 2012-05-20T17:17:40 http://comments.gmane.org/gmane.comp.apache.uima.devel/14415 <pre>Jerry Cwiklik created UIMA-2403: ----------------------------------- Summary: Uima-AS build seems broken. Jenkins keeps failing Key: UIMA-2403 URL: https://issues.apache.org/jira/browse/UIMA-2403 Project: UIMA Issue Type: Bug Components: Async Scaleout Reporter: Jerry Cwiklik Fix For: 2.4.0AS Jenkins fails during uima-as build with the following: Waiting for Jenkins to finish collecting data mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.uima:uima-build-helper-maven-plugin:3:copy-from-apache-dist (default) on project uima-as: While creating local file in location /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/uima/uimaj/2.4.0/uimaj-2.4.0-bin.zip cause : While creating local file in location /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/uima/uimaj/2.4.0/uimaj-2.4.0-bin.zip Stack trace : org.apache.maven.lifecycle.LifecycleExecutionExcepti</pre> Jerry Cwiklik (JIRA 2012-05-17T23:19:11 http://comments.gmane.org/gmane.comp.apache.uima.devel/14410 <pre>Hi all, recently I've been playing (and coding) with BSP [1] based algorithms using Apache Hama [2] (which officially graduated to TLP yesterday) and I found that in many cases there were significant performance boosts with respect to a "plain" MapReduce based algorithm, so I thought it would have made sense to write a UIMA collection processing algorithm using Hama. I started sketching it up on a sample project on GitHub [3] but I think it would make sense to put it on our sandbox so that anyone can have a look/use/improve/evaluate it. The current implementation I have just reads files from a directory inside the filesystem, process them in parallel and collects the ProcessTraces inside an output file but my idea is that it may come just as a new CPM implementation reading and writing from/to HDFS. I know it's a lot of things in few lines so feel free to ask for more clarifications. Have a nice day, Tommaso [1] : http://en.wikipedia.org/wiki/Bulk_synchronous_parallel [2] : http://incubator.apache.org/ha</pre> Tommaso Teofili 2012-05-17T07:25:40 http://comments.gmane.org/gmane.comp.apache.uima.devel/14408 <pre>Peter Klügl created UIMA-2402: --------------------------------- Summary: TextMarker: Enable advanced matching options for CSV tables Key: UIMA-2402 URL: https://issues.apache.org/jira/browse/UIMA-2402 Project: UIMA Issue Type: New Feature Components: TextMarker Reporter: Peter Klügl Assignee: Peter Klügl Priority: Minor The dictionary-matching for the entries of CSV tables with the action MARKTABLE only supports exact matches since it is not configurable by the arguments of the action. The implementation is based on the trie word lists that support options like ignoreCase or ignoreChars. Enable this functionality by extending the language definition of the action. -- This message is automatically generated by JIRA. If you think it was sent incorrectly, please contact your JIRA administrators: https://issues.apache.org/jira/secure/ContactAdministrators!default.jspa For more information o</pre> Peter Klügl (JIRA 2012-05-16T13:53:02 http://comments.gmane.org/gmane.comp.apache.uima.devel/14403 <pre>Hi, How i can add-on components (annotators and consumes) in UIMA? list of components: http://uima.apache.org/sandbox.html#UIMA%20Addons%20components Thanks </pre> Arash Hossein Abady 2012-05-13T12:06:32 Search the mailing list at Gmane query http://search.gmane.org/?group=$group=gmane.comp.apache.uima.devel