http://blog.gmane.org/gmane.comp.misc.ontology.protege.general hourly 1 1901-01-01T00:00+00:00 http://gmane.org/img/gmane-25t.png http://gmane.org http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20774 <pre>======================================================================== The 13th International Conference on Web Information System Engineering (WISE 2012) http://www.wise2012.cs.ucy.ac.cy November 28th-30th, 2012, Paphos, Cyprus ======================================================================== *** EXTENDED DEADLINE: 22nd June 2012 *** *** CALL FOR PAPERS AND RESEARCH DEMOS *** The aim of this thirteenth edition of the conference series on Web Information Systems Engineering is to provide an international forum for researchers, professionals, and industrial practitioners to share their knowledge in the rapidly growing area of Web technologies, methodologies and applications. Previous WISE conferences were held in Hong Kong, China (2000), Kyoto, Japan (2001), Singapore (2002), Roma, Italy (2003), Brisbane, Australia (2004), New York, USA (2005), Wuhan, China (2006), Nancy, France (2007), Auckland, New Zealand (2008), Poznan, Poland (2009), Hong Kong, China (2010), and Sydney, Australia (2011). The proceedings of WISE 2012 will be published in 2 separate volumes by Springer in its Lecture Notes in Computer Science series, with best papers to be recommended for publication in special issues of international journals (including World Wide Web). Topics of interests include but are not limited to: * Cloud Computing * Discovering Social Web structures and models * Deep/Hidden Web; * Event Processing and Event-driven Systems; * Evolution and temporal analysis of the Social Web; * Integration of the Web and Internet-connected Objects / IoT; * Linked Open Data; * Peer-Computing; * Rich Web UI; * Search, Text and media extraction, clustering and classification of the Social Web * Semantic Web; * Social web and Applications; * Web Agents and Web Intelligence; * Web-based Applications (e.g., Auction and Negotiation, e-Commerce, e-Government, e-Learning, etc.); * Web-based Business Processes and Web Services; * Web-based Enterprise Systems and Transactions; * Web Data Integration; * Web Data Mashup; * Web Data Models; * Web Information Retrieval; * Web Metrics and Performance; * Web Mining and Web Warehousing; * Web Monitoring and Management; * Web Security and Trust Management; * Web Tools and Languages; * Web Visualisation; and * XML and Semi-structured Data. Important Dates --------------- * Research Paper Abstract Submission: 15th June 2012 * Research Paper Submission: 22nd June 2012 * Demonstration Paper Submission: 22nd June 2012 * Paper Notification of Acceptance: 3rd August 2012 * Accepted Paper Camera-ready: 31st August 2012 * Workshop Proposal Submission: 18th May 2012 * Workshop Proposal Notification: 25th May 2012 Publication ----------- Submitted papers will be carefully evaluated based on originality, significance, technical soundness, and clarity of exposition. All papers will be refereed by at least three members of the program committee. Participants submitting demos are required to submit a 2-page short paper describing the demo content, research, relevance and importance to the web information system community. For demos, participants will be able to showcase the demo during the conference. All submitted papers MUST be formatted according to the author guidelines provided by Springer LNCS format and MUST NOT exceed 14 pages for research papers and 2 pages for demo papers. Submissions must be done via Easychair: https://www.easychair.org/account/signin.cgi?conf=wise2012 A special issue of WWWJ is scheduled for extended versions of some selected papers from the WISE2012 conference. Organizing Committee -------------------- * General Co-Chairs: Yanchun Zhang, Victoria University, Australia George Angelos Papadopoulos, University of Cyprus, Cyprus * PC Co-Chairs: Xiaoyang (Sean) Wang, Fudan University, China Isabel Cruz, The University of Illinois at Chicago Alex Delis, University of Athens, Greece * WISE Challenge Program/Track Co-Chairs: Xiaofang Zhou, University of Queensland, Australia Weining Qian, East China Normal University, China * Workshop Co-Chairs: Armin Haller, CSIRO, Australia Zhisheng Huan, Vrije University Amsterdam, The Netherlands * Demonstration Papers Vo-Chairs: Georgia Kapitsaki, University of Cyprus, Cyprus Gustavo Rossi, La Plata National University, Argentina * Publication Chair: Guangyan Huang, Victoria University, Australia * Publicity Co-Chairs: Demetris Zeinalipour-Yatzi, University of Cyprus, Cyprus Jing Yang, Graduate University, Chinese Academy of Sciences, China * Local Arrangement Chair: Petros Stratis, Easyconferences Ltd. -------------------------------------------------------------------- This is not SPAM. If you want to be removed from this list, please send an email to [announce&lt; at &gt;cs.ucy.ac.cy] with the single word 'remove' in the subject of the email. _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Announcements 2012-05-25T10:23:45 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20773 <pre>Hi everyone, First, I apologize for cross posting. I am not certain which list is best for my questions. I am using P4 alpha with the Tabbed Subclasses plugin written by Nick Drummond in conjunction with a driver written with the OWL API (v2.2.0). The purpose of the driver is to extract a branch (or branches) into a new OWL file. I use Perl afterwards to remove any classes outside the branch, as well as outward pointing restrictions from classes within the branch. By removing these axioms, a clean branch is produced. Nick's plugin is excellent because I can quickly copy a hierarchy of classes based on a focus node, and provide this list of classes to the program for extraction. Not only that, but rdfs:subClassOf and rdf:Descriptions (found in equivalent classes of Thesaurus) are properly represented in Tabbed Subclasses (and naturally P4). The method I wrote long ago (line 212, getDescendants), using a focus node as a parameter, does not perform exactly the same as the plugin implementation. For example, it will retrieve all classes of the Gene branch, but not all of the classes of the Disease branch. After discovering this issue, I began copying and pasting from the plugin to feed classes to the OWL API one by one. This works great, but is not considered a contained implementation. So attached, I've tried bringing in necessary P4 source code based on the plugin. - AbstractOWLObjectHierarchyProvider - AssertedClassHierarchyProvider - AssertedClassHierarchyProvider2 - OWLObjectHierarchyProvider - OWLObjectHierarchyProviderListener Even with recursion, I only get the root. What must I do to get a complete Set like the plugin? Please do not suggest a reasoner, as instantiation/classification takes too much time. Finally, how do I bring in annotations on annotation properties? Currently, only annotation declarations are brought in. Their Definitions, Semantic Types, etc. are not. For example I can get: &lt;owl:AnnotationProperty rdf:about="&amp;Thesaurus;DEFINITION"/&gt; But not (in addition): &lt;!-- http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#DEFINITION --&gt; &lt;owl:DatatypeProperty rdf:about="#DEFINITION"&gt; &lt;rdf:type rdf:resource="http://www.w3.org/2002/07/owl#AnnotationProperty"/&gt; &lt;rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"&gt;DEFINITION&lt;/rdfs:label&gt; &lt;DEFINITION rdf:parseType="Literal" &gt;&lt;ncicp:ComplexDefinition&gt;&lt;ncicp:def-definition&gt;English language definitions of what NCI means by the concept. These are limited to 1024 characters. They may also include information about the definition's source and attribution in a form that can easily be interpreted by software.&lt;/ncicp:def-definition&gt;&lt;ncicp:def-source&gt;NCI&lt;/ncicp:def-source&gt;&lt;/ncicp:ComplexDefinition&gt;&lt;/DEFINITION&gt; &lt;FULL_SYN rdf:parseType="Literal" &gt;&lt;ncicp:ComplexTerm&gt;&lt;ncicp:term-name&gt;DEFINITION&lt;/ncicp:term-name&gt;&lt;ncicp:term-group&gt;PT&lt;/ncicp:term-group&gt;&lt;ncicp:term-source&gt;NCI&lt;/ncicp:term-source&gt;&lt;/ncicp:ComplexTerm&gt;&lt;/FULL_SYN&gt; &lt;Semantic_Type rdf:datatype="http://www.w3.org/2001/XMLSchema#string" &gt;Conceptual Entity&lt;/Semantic_Type&gt; &lt;Preferred_Name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"&gt;DEFINITION&lt;/Preferred_Name&gt; &lt;Display_Name rdf:datatype="http://www.w3.org/2001/XMLSchema#string"&gt;Definition&lt;/Display_Name&gt; &lt;code rdf:datatype="http://www.w3.org/2001/XMLSchema#string"&gt;P97&lt;/code&gt; &lt;/owl:DatatypeProperty&gt; Thanks, Rob _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Wynne, Robert (NIH/NCI) [C] 2012-05-24T22:35:09 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20770 <pre>Hi guys, I have been trying to store the ontology into the MySQL database via one kind of ontology storing method, everything is Ok except for an encoding problem. My native language is chinese, so there are several concepts described in chinese in the ontology file, while, during the process of storing, the chinese characters cannot show normally in tables, all chinese characters are showed as the characters '?'. The error message is: Exception in thread "main" com.hp.hpl.jena.shared.JenaException: org.xml.sax.SAXParseException: Content is not allowed in prolog. at com.hp.hpl.jena.rdf.model.impl.RDFDefaultErrorHandler.fatalError(RDFDefaultErrorHandler.java:45) at com.hp.hpl.jena.rdf.arp.impl.ARPSaxErrorHandler.fatalError(ARPSaxErrorHandler.java:35) at com.hp.hpl.jena.rdf.arp.impl.XMLHandler.warning(XMLHandler.java:225) at com.hp.hpl.jena.rdf.arp.impl.XMLHandler.fatalError(XMLHandler.java:255) at org.apache.xerces.util.ErrorHandlerWrapper.fatalError(Unknown Source) at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source) at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source) at org.apache.xerces.impl.XMLScanner.reportFatalError(Unknown Source) at org.apache.xerces.impl.XMLDocumentScannerImpl$PrologDispatcher.dispatch(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at org.apache.xerces.parsers.DTDConfiguration.parse(Unknown Source) at org.apache.xerces.parsers.DTDConfiguration.parse(Unknown Source) at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) at com.hp.hpl.jena.rdf.arp.impl.RDFXMLParser.parse(RDFXMLParser.java:107) at com.hp.hpl.jena.rdf.arp.JenaReader.read(JenaReader.java:158) at com.hp.hpl.jena.rdf.arp.JenaReader.read(JenaReader.java:145) at com.hp.hpl.jena.rdf.arp.JenaReader.read(JenaReader.java:183) at com.hp.hpl.jena.rdf.model.impl.ModelCom.read(ModelCom.java:192) at store.storeSchema.ceateDBModelFromFile(storeSchema.java:79) at store.storeSchema.main(storeSchema.java:358) Caused by: org.xml.sax.SAXParseException: Content is not allowed in prolog. at org.apache.xerces.util.ErrorHandlerWrapper.createSAXParseException(Unknown Source) ... 17 more The relevant code is as follows: public static OntModel ceateDBModelFromFile(IDBConnection con, String name, String filePath){ ModelMaker maker = ModelFactory.createModelRDBMaker(con); Model base = maker.createModel(name); OntModel newmodel = ModelFactory.createOntologyModel(getModelSpec(maker),base); Model defModel = maker.createModel(name); defModel.commit(); FileInputStream read = null; try{ read = new FileInputStream(filePath); }catch (FileNotFoundException e){ e.printStackTrace(); System.out.println("未找到要存储的本体文件，请检查文件地址及名称"); } InputStreamReader in = null; try { in = new InputStreamReader((FileInputStream)read, "UTF-8"); } catch (UnsupportedEncodingException e) { e.printStackTrace(); System.out.println("不支持上述字符集。"); } defModel.begin(); defModel.read(in,null); try { in.close(); } catch (IOException e){ e.printStackTrace(); System.out.println("无法关闭字节流文件。"); } defModel.commit(); System.out.println("数据转换执行完毕，已将本体文件存入数据库。"); try{ con.close(); } catch (SQLException e){ e.printStackTrace(); System.out.println("文件无法关闭。"); } System.out.println("已将本体文件持久化到数据库中"); return newmodel; } What are the probable causes could lead to the upper problem, and how to deal with the problem mentioned above? Any reply from you is really appreciated! _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Wentao Zhou 2012-05-22T10:17:04 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20766 <pre>Hello, I really don't know where ask about this, sorry for any inconvenience. I'm using Protégé 3.4.8 and OWLViz don't function with accent characters (OWLViz build 17). With OWLViz build 18, in Protégé 4, the problem apparently is solved. There's no way to use de last build (18) of OWLViz on Protégé 3.4.8? Or some other way to fix this? Ontoviz have the same problem, don't accept accent characters. Thanks for any feedback. </pre> Fabio Aiub Sperotto 2012-05-19T02:45:42 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20765 <pre>--------------Apologies for cross posting-------------- ********************************************************************************* Call for Tutorial Proposals http://ekaw2012.ekaw.org/node/63 at the International Conference on Knowledge Engineering and Knowledge Management a 2012 http://www.ekaw.org/ ********************************************************************************* Introduction ------------ The International Conference on Knowledge Engineering and Knowledge Management (EKAW) is concerned with all aspects of eliciting, acquiring, modeling and managing knowledge, as well as its role in the construction of knowledge-intensive systems and services for the semantic web, knowledge management, e-business, natural language processing, and intelligent information integration. The focus of the 18th edition of EKAW will be on "Knowledge Engineering and Knowledge Management that matters". Besides a research track, EKAW will host a number of tutorials on topics related to the theme of the conference. Tutorials enable attendees to fully appreciate current issues, main schools of thought, and possible application areas. Tutorial notes will be published separately in a companion booklet. Topics of Interest ------------------ In order to meet these goals, tutorials should address topics that satisfy the following criteria: - the topic falls in the general scope of EKAW 2012, - there is a clear focus on a specific technology, problem or application, and - there is a sufficiently large community interested in the topic. In particular, we encourage the submission of tutorial proposals on: - Knowledge Management - Knowledge Engineering and Acquisition - Social and Cognitive Aspects of Knowledge Representation and Reasoning - User interaction, querying, and interfaces Additionally, tutorials could also include: practical parts in terms of examples or exercises to be carried out by the participants Proposers of accepted tutorials have to prepare a tutorial webpage containing detailed information about the tutorial. Submission Guidelines --------------------- Tutorial proposals should be submitted via EasyChair https://www.easychair.org/conferences/?conf=ekaw2012workshopandt as a single PDF file of no more than 5 pages, specifying “Tutorial Proposal”. Proposals should contain the following information: - Title. - Abstract (200 words) - Motivation on why the topic is of particular interest at this time - Relation to the conference topics. - If the tutorial, or a very similar tutorial has been given elsewhere, explanation of the benefit of presenting it again to the EKAW community - Overview of content, description of the aims, presentation style, potential/preferred prerequisite knowledge; - Indication on whether the tutorial should be considered for a half-day or full-day. - Intended audience and expected number of participants. - Audio-visual or technical requirements and any special room requirements (for hands-on sessions, any software needed and download sites must be provided by the tutorial presenters). - Data of the presenters (name, affiliation, email address, homepage) and short CV including also their expertise, experiences in teaching and in tutorial presentation. Important Dates --------------- Event October 8-9, 2012 Tutorial submission May 16, 2012 Tutorial notifications June 10, 2012 Chairs ------ Claudia d’Amato, University of Bari, Italy Krzysztof Janowicz, University of California, Santa Barbara, USA _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Claudia d'Amato 2012-05-16T10:06:47 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20764 <pre>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ DILS 2012 Call for Participation ++++++++++++ ++++++++++++ Registration is open: http://www.cvent.com/d/9cq14w/1Q Deadline for posters and demos: May 31, 2012 ++++++++++++ ++++++++++++ 8th International Conference on Data Integration in the Life Sciences College Park, MD, USA, June 28-29, 2012 http://sites.google.com/site/webdils2012 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ------------------- About the Conference ------------------- Applications of data integration in the life sciences have started to provide significant results. For example, the eMERGE Network has recently demonstrated that combining phenotype information extracted from electronic medical records with genotype information in order to study the relationship between genome-wide genetic variation and common human traits is a viable and cost-effective alternative to the traditional genome-wide association studies (GWAS). Of course, such studies leverage the foundational work of the past decade on biomedical data integration (architectures, data models, ontologies, privacy, etc), which had paved the way for life sciences infrastructures, such as ELIXIR, the open source Informatics for Integrating Biology and the Bedside (i2b2) platform, and federated query tools, such as the Shared Health Research Information Network (SHRINE). The increasing availability of "big data", coming from high-throughput analytical techniques, large clinical data repositories, the biomedical literature and online resources, offers exciting opportunities to researchers, but also poses new integration challenges. DILS 2012 is the 8th in a series on international conferences that aim at fostering discussion, exchange, and innovation in research and development in the areas of data integration and data management for the life sciences. Researchers and professionals from biology, medicine, computer science and engineering are invited to share their knowledge and experience. DILS 2012 will have three keynotes talks, peer-reviewed paper presentations, flash presentations, and a poster/demo session. ---------------- Poster/demo submission ---------------- DILS 2012 invites submissions for posters and demos to be presented in the poster/demo session at the conference. Please submit poster/demo abstracts to dils2012conference at gmail.com as plain text files (up to 400 words, exclusive of title, authors and affiliations), clearly specifying the category (Poster or Demo). The poster/demo abstracts are not part of the main DILS 2012 proceedings, but will be published on the DILS web site and distributed at the conference. The organizers will provide a basic setup (easels, tables), but no computers or projectors. The best posters will be selected for a flash presentation during the main conference. Submission: May 31, 2012 ---------------- Keynote speakers ---------------- * Jim Ostell, NCBI, National Library of Medicine, NIH Entrez: The NCBI Search and Discovery Engine * Ken Barker, IBM Watson group Combining Structured and Unstructured Knowledge Sources for Question Answering in Watson * Jim Cimino, Clinical Center, NIH The Biomedical Translational Research Information System: Clinical Data Integration at the National Institutes of Health ---------------- Program ---------------- - Foundations of Data Integration * InterOnto - Ranking Inter-Ontology Links Silke Trißl, Philipp Hussels and Ulf Leser * Finding Cross Genome Patterns in Annotation Graphs Joseph Benik, Caren Chang, Louiqa Raschid, Maria Esther Vidal, Guillermo Palma and Andreas Thor * Pay-as-you-go Ranking of Schema Mappings using Query Logs Ruhaila Binti Maskat, Norman W. Paton and Suzanne Embury - New Paradigms for Data Integration * Cancer Data Integration and Querying with GeneTegra E. Patrick Shironoshita, Yves R. Jean-Mary, Ray M. Bradley, Patricia Buendia and Mansur R. Kabuka * Integrating large, disparate biomedical ontologies to boost organ development network connectivity Chimezie Ogbuji and Rong Xu * Crowdsourcing for Validating Candidate Gene-Mutation Relations in MEDLINE Abstracts John D. Burger, Emily Doughty, Sam Bayer, David Tresner-Kirsch, Ben Wellner, John Aberdeen, Kyungjoon Lee, Maricel G. Kann and Lynette Hirschman - Integrating Clinical Data * ONCO-i2b2: improve patients selection through case-based information retrieval techniques Daniele Segagni, Riccardo Bellazzi, Alberto Zambelli, Silvia G. Priori, Matteo Gabetta and Valentina Tibollo * Syntactic-Semantic Frames for Clinical Cohort Identification Queries Dina Demner-Fushman and Swapna Abhyankar _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Olivier Bodenreider 2012-05-15T18:44:51 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20761 <pre> (apologies for cross-posting) ... (please distribute) ------------------------------------------------------- Call for Papers &gt;&gt; OBML 2012 &lt;&lt; Sep 27-28, Dresden, Germany Submission deadline: Aug 01, 2012 [1] https://wiki.imise.uni-leipzig.de/Gruppen/OBML/Workshops/2012 ------------------ Fourth Workshop of Ontologies in Biomedicine and Life Sciences (OBML 2012) Goals of OBML ------------- The workshop series on "Ontologies in Biomedicine and Life Sciences" (OBML workshop) was initiated by the working group for OBML of the German Society for Computer Science in 2009. The OBML workshop aims to bring together scientists who are working on all areas of ontologies applied to biomedicine and the life sciences to exchange ideas, discuss new results, start collaborations and to initiate new projects. The OBML workshop is held annually and deals with all aspects of biomedical ontologies as well as additional "hot" topics. This year's "hot" topic is the representation of physiology. Physiology is the science of the functions and functionings of biological systems, and significant resources have been invested in biology and medicine to describe and simulate physiological processes. In particular, researchers in systems biology and systems medicine have generated a large number of computational models to predict the outcome of physiological processes on a sub-cellular, cellular, tissue and organ-level scale, and projects such as the Virtual Physiological Human aim to extend this work further and create a computational model of human physiology. While ontologies are now widely applied to integrate biomedical data in many domains, the complexity of the physiology domain has limited the success of ontologies so far. We aim to address this problem in the OBML workshop by organizing a special session on the ontology of physiology. This session will bring together researchers in ontology, biomedicine, systems biology and knowledge representation to present their solutions and requirements for the domain of physiology. Topics ------ We invite submissions in all areas of biomedical ontology, including the following topics: - applications of ontologies and terminologies in biology, medicine, and clinical research - methods and tools for the construction and management of ontologies - ontologies for knowledge representation, methods of reasoning, integration and interoperability of ontologies - applications of the Semantic Web and knowledge representation formalisms in biomedicine and the life sciences - new biomedical ontologies and updates to existing ontologies For our special session on "ontology of physiology", we are particularly interested in - ontology and systems biology - ontology of processes - ontology of functions, functionings, dispositions and tendencies - links between physiology, phenotypes and disease - use of ontologies for the description of parameters, inputs, simulations and simulation results of computational models Submission instructions ----------------------- Submissions to the workshop should comprise 2-4 pages and must be written in English. The preferred file format for submissions is PDF, other admitted formats are Microsoft Word (DOC and DOCX) and Postscript (PS). Please use the corresponding template for submissions, either the LaTeX template or the Microsoft Word template. Submissions must be submitted via Easychair at [2] http://www.easychair.org/conferences/?conf=obml2012 Dates ----- Submission deadline: August 01, 2012 Author notification: August 31, 2012 Submission of camera-ready manuscripts: September 16, 2012 OBML Workshop: September 27-28, 2012 Location -------- The OBML Workshop 2012 will take place in Dresden, Germany, presumably at the Biotechnology Center of the Technical University. Invited Speakers ---------------- Francisco Couto (Universidade de Lisboa) Michael Schroeder (Technical University Dresden) George Gkoutos (University of Cambridge) Organization ------------ Robert Hoehndorf (chair) Martin Boeker (program chair) Heinrich Herre (program chair) Frank Loebe (co-organizer) Local Organization ------------------ Michael Schroeder (Biotechnology Center, Technical University Dresden) Program committee ----------------- TBA (see [1] for updates) Links ----- [1] Workshop website https://wiki.imise.uni-leipzig.de/Gruppen/OBML/Workshops/2012 [2] Submission system http://www.easychair.org/conferences/?conf=obml2012 _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> frank.loebe< at >informatik.uni-leipzig.de 2012-05-11T15:46:33 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20760 <pre>======================================================== 6th Int'l Workshop on Modular Ontologies (WoMO) Graz, Austria, July 24, 2012 held in conjunction with FOIS 2012 --- Final Call for Papers --- ======================================================== +++ EXTENDED SUBMISSION DEADLINE: May 18, 2012 +++ ======================================================== +++ Following requests, we have extended the submission deadline to MAY 18, 2012. +++ INVITED SPEAKERS: * Thomas Eiter, Vienna University of Technology, Austria Title TBA * Luciano Serafini, Fondazione Bruno Kessler, Trento, Italy Multi context logics: a formal support for structuring knowledge and beliefs (Tentative title) http://www.informatik.uni-bremen.de/~ts/womo2012 MODULARITY, studied for years in software engineering, allows mechanisms for easy and flexible reuse, generalization, structuring, maintenance, design patterns, and comprehension. In formal and applied ontology, modularity is central to reducing the complexity of designing and understanding ontologies, and to facilitating ontology verification, reasoning, development, maintenance and integration. Recent research on ontology modularity shows substantial progress in foundations of modularity, techniques of modularization and modular development, distributed reasoning and empirical evaluation. These results provide a solid foundation and exciting prospects for further research and development. The workshop continues a series of successful events that have been an excellent venue for practitioners and researchers to discuss latest and current work; the most recent WoMOs were held at FOIS 2010 and ESSLLI 2011. TOPICS include, but are not limited to: - What is modularity?: kinds of modules and their properties; modules vs. contexts; design patterns; granularity of representation; - Logical/foundational studies: conservativity; modular ontology languages; reconciling inconsistencies across modules; formal structuring of modules; heterogeneity; - Algorithmic approaches: distributed and incremental reasoning; modularization and module extraction; sharing, linking, reuse; privacy; evaluation of modularization approaches; complexity of reasoning; implemented systems; - Applications: semantic web; life sciences; bio-ontologies; natural language processing; space and time; ambient intelligence; social intelligence; collaborative ontology development and ontology versioning. IMPORTANT DATES Paper Submission: May 18, 2012 Notification: June 19, 2012 Camera ready: July 6, 2012 Workshop: July 24, 2012 SUBMISSION GUIDELINES: We welcome submissions on modularity in a broad sense. The workshop is open to papers of theoretical or practical nature. Submissions should be of up to 11 pages in length, formatted according to Springer LNCS style (see http://www.springer.com/comp/lncs/Authors.html), prepared in PDF format and submitted no later than May 18, 2012, through the EasyChair Submission System (see http://www.easychair.org/conferences/?conf=womo2012). Submitted papers will be peer-reviewed by members of the program committee. Accepted papers will be made available in the proceedings to be published electronically in the CEUR Workshop Proceedings series (see http://www.ceur-ws.org). (Find the WoMO 2010 and 2011 proceedings here http://www.booksonline.iospress.nl/Content/View.aspx?piid=16268 and http://www.booksonline.iospress.nl/Content/View.aspx?piid=20369) WORKSHOP CHAIRS: Thomas Schneider, University of Bremen, Germany Dirk Walther, Technical University of Madrid (UPM), Spain PROGRAM COMMITTEE: Kenneth Baclawski, Northeastern University, Boston, MA, USA Stefano Borgo, Italian National Research Council, Trento, Italy Oscar Corcho, Universidad Politecnica de Madrid, Spain Bernardo Cuenca Grau, University of Oxford, UK Mike Dean, Raytheon BBN Technologies, Ann Arbor, MI, USA Silvio Ghilardi, Universita degli Studi di Milano, Italy Michael Gruninger, University of Toronto, Canada Janna Hastings, EMBL-EBI, Cambridge, UK Robert Hoehndorf, University of Cambridge, UK Boris Konev, University of Liverpool, UK Roman Kontchakov, Birkbeck College, London, UK Thomas Meyer, Meraka Institute, CSIR, Pretoria, South Africa Till Mossakowski, University of Bremen, Germany Immanuel Normann, Birkbeck College, London, UK Leo Obrst, MITRE, McLean, VA, USA Adrian Paschke, Free University of Berlin, Germany David Perez del Rey, Universidad Politecnica de Madrid, Spain Uli Sattler, University of Manchester, UK Luciano Serafini, Fondazione Bruno Kessler, Trento, Italy _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> WoMO 2012 2012-05-10T21:53:08 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20758 <pre>We are pleased to announce availability of the first beta build of Protege 3.5: http://protege.stanford.edu/download/registered.html#p3.5 The main focus of the 3.5 series is the SWRLTab's [1] support of the Drools [2] rule engine, thus providing a completely free and open source solution for executing SWRL rules in Protege-OWL. Release notes ------------------- - Collection of minor bug fixes for the SWRLTab. - Removed the Algernon, UMLS tab, and WordNet tab plug-ins from the distribution, as they are no longer maintained. Other helpful links -------------------------- Online version of these release notes: http://protegewiki.stanford.edu/wiki/Protege_3.5_Beta_Release_Notes Release notes archive: http://protegewiki.stanford.edu/wiki/Protege_Release_Notes Protege 3 documentation: http://protegewiki.stanford.edu/wiki/Protege3UserDocs Protege on Facebook: https://www.facebook.com/pages/Protege-Project/136205016405270 Protege on Twitter: https://twitter.com/#!/protegeproject &lt;https://twitter.com/#%21/protegeproject&gt; Best Regards, The Protege Team [1] http://protege.cim3.net/cgi-bin/wiki.pl?SWRLTab [2] http://www.jboss.org/drools _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Jennifer Vendetti 2012-05-09T22:58:22 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20756 <pre> *** Call for Papers *** The 15th IEEE International Conference on Computational Science and Engineering (IEEE CSE 2012) http://www.cse2012.cs.ucy.ac.cy/ The 10th IEEE/IFIP International Conference on Embedded and Ubiquitous Computing (IEEE/IFIP EUC 2012) http://www.euc2012.cs.ucy.ac.cy/ 3-5 October 2012, Paphos, Cyprus *** EXTENDED DEADLINE: 10th June 2012 *** CSE 2012 The Computational Science and Engineering area has earned prominence through advances in electronic and integrated technologies beginning in the 1940s. Current times are very exciting and the years to come will witness a proliferation in the use of various advanced computing systems. It is increasingly becoming an emerging and promising discipline in shaping future research and development activities in academia and industry, ranging from engineering, science, finance, economics, arts and humanitarian fields, especially when the solution of large and complex problems must cope with tight timing schedules. CSE 2012 is the next event, in a series of highly successful IEEE International Conferences on Computational Science and Engineering, held mainly as the International Workshop on High Performance Scientific and Engineering Computing for 10 editions. The previous CSE-11 was held in Dalian, China, August 24-26, 2011. CSE 2012 is to bring together computer scientists, applied mathematicians, engineers in different disciplines and researchers to present, discuss and exchange ideas, results and experiences in the area of advanced computing for problems in science and engineering applications and inter-disciplinary. We are inviting new and unpublished papers on, but not limited to, the following topics: * Intelligent and Bio-inspired Computing * Distributed and Parallel Computing * Database and Data Mining * Cluster, Grid, P2P and Cloud Computing * Mobile Computing and Wireless Communications * CSE Education * Scientific and Engineering Computing * Embedded and Ubiquitous Computing * Advanced Networking and Applications * Security, Privacy and Trust * Service and Internet Computing - Dependable, Reliable and Autonomic Computing * CSE applications EUC 2012 Embedded and ubiquitous computing is an exciting paradigm that promises to provide computing and communication services to the end users all the time and everywhere. Its systems are now invading in every aspect of our daily life and promise to revolutionize our life much more profoundly than elevators, electric motors or even personal computer evolution ever did. The emergence of this technology is a natural outcome of research and technological advances in a variety of areas including embedded systems, pervasive computing and communications, wireless networks, mobile computing, distributed computing and agent technologies. EUC 2012 is the next event, in a series of highly successful IEEE International Conferences on Embedded and Ubiquitous Computing (EUC), previously held as ICDCS-ECS04 (Tokyo, Japan, March 2004), EUC-04 (Aizu, Japan, August 2004), EUC-05 (Nagasaki, Japan, December 2005), EUC-06 (Seoul, Korea, August 2006), EUC-07 (Taipei, Taiwan, December 2007), EUC-08 (Shanghai, China, December 2008), EUC-09 (Vancouver, Canada, August 2009), EUC-10 (Hong Kong, December 2010) and EUC 2011 (Melbourne, Australia, October 2011). Topics of particular interest include, but are not limited to: Embedded Computing * Embedded System Software and Optimization * Embedded System Architectures * Hardware/Software Co-design and Design Automation * Real-Time Systems and Operating Systems * Application-Specific Processors and Devices * Power-Aware Computing * Sensor Networks * System/Network-on-Chip * Reconfigurable Computing Systems and Applications * Cyber-Physical Systems Ubiquitous Computing * Pervasive Computing and Communications * Middleware and Peer-to-Peer Computing * Internet Computing and Applications * Multimedia and Data Management * Human-Computer Interaction * Network Protocols * Wireless Communication &amp; Networks * Mobile Computing * Agents and Distributed Computing * Security and Fault Tolerance Applications Submission Guidelines Submitted papers must not substantially overlap papers that have been published or that are simultaneously submitted to a journal or a conference with proceedings. Papers should be at most 8 pages including the bibliography and well-marked appendices, and should follow the IEEE 8.5" x 11" Two-Column Format. Committee members are not required to read the appendices, and so the paper should be intelligible without them. Submissions are to be made to the submission web site. Only pdf files will be accepted. Submissions not meeting these guidelines risk rejection without consideration of their merits. Papers must be received by the submission deadline. Authors of accepted papers must guarantee that their papers will be presented at the conference. Accepted papers will be published in the IEEE conference proceedings (EI indexed). Selected best papers will be published in special issues of high quality journals (currently under negotation). Important Dates * Submission Deadline: 10 June * Notification of Acceptance: 15 July * Camera-ready Versions Submitted: 31 July * Author Registration: 31 July -------------------------------------------------------------------- This is not SPAM. If you want to be removed from this list, please send an email to [announce&lt; at &gt;cs.ucy.ac.cy] with the single word 'remove' in the subject of the email. _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Announcements 2012-05-09T09:22:59 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20753 <pre> HI, I have different ontology and I would merge these in a single one. So, can I, starting from one ontology, import the others directly? thank you! roberta _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> rperro88< at >hotmail.com 2012-05-09T08:04:22 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20752 <pre>I hope this is the right place to post this question. The question is related to the DataMaster plugin. Is it possible to exclude columns when importing a table? I have a CLOB column that I don't want to incude. Thanks a lot, Vessie _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Bakalov, Vesselina D. 2012-05-08T20:21:49 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20749 <pre>Hello all, I am trying to install WebProtege on UNIX CentOS 64bit (2.6.18-164.11.1.el5 x86_64). I downloaded Webprotege_2011.05.28.war.zip and tried Local mode and External Server Mode with Protege 3.4.6. Both didn't work. Protege 3.4.6 server works fine using ./protege or run_protege.bat command. But http://xxx.xxx.xxx/webprotege/WebProtege.html always says "There was an error retrieving ontologies from server. Please try again". And I could not login using webprotege user and password. I changed the protege.properties file load.ontologies.from.protege.server=false/true based on the mode I used. Also, I figured out I need to change the history.projects.reopen path to the example project location on my UNIX. The java on my UNIX server is Java 1.6.0 (java version "1.6.0" OpenJDK Runtime Environment (build 1.6.0-b09) OpenJDK 64-Bit Server VM (build 1.6.0-b09, mixed mode)). It runs Apache web server. Is this the reason I can't get it work? Do I have to install Tomcat? I appreciate if you could help. Thank you very much! Suzhi _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Suzhi Wang 2012-05-08T15:16:09 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20748 <pre> *** Call for Workshop Proposals *** *** Deadline: 18th May 2012 *** 13th International Conference on Web Information Systems Engineering (WISE 2012) http://www.wise2012.cs.ucy.ac.cy November 28th-30th, 2012, Paphos, Cyprus You are invited to submit a workshop proposal as part of the WISE 2012 conference. Proposals should include the following information: * the workshop (co-)chair(s) with a brief bio as well as key workshop officers * the goals and content of the workshop and the list of topics for which contributions are sought * proposed length of the workshop, its structure, and anticipated number of attendees WISE2012  will provide administrative support in the areas of registration, hotel meeting rooms, and publication of the workshop proceedings (in Springer). Workshop proposals should be e-mailed in a PDF to Armin Haller (email: Armin.Haller&lt; at &gt;csiro.au) or Zhisheng Huang (email: huang.zhisheng.nl&lt; at &gt;gmail.com) before the 18th May, 2012. WISE2012 Workshop Co-chairs: Armin Haller, CSIRO, Australia Zhisheng Huang, Vrije University Amsterdam, the Netherlands -------------------------------------------------------------------- This is not SPAM. If you want to be removed from this list, please send an email to [announce&lt; at &gt;cs.ucy.ac.cy] with the single word 'remove' in the subject of the email. _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Announcements 2012-05-08T13:50:15 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20747 <pre>======================================================================== The 13th International Conference on Web Information System Engineering (WISE 2012) http://www.wise2012.cs.ucy.ac.cy November 28th-30th, 2012, Paphos, Cyprus ======================================================================== *** EXTENDED DEADLINE: 22nd June 2012 *** *** CALL FOR PAPERS AND RESEARCH DEMOS *** The aim of this thirteenth edition of the conference series on Web Information Systems Engineering is to provide an international forum for researchers, professionals, and industrial practitioners to share their knowledge in the rapidly growing area of Web technologies, methodologies and applications. Previous WISE conferences were held in Hong Kong, China (2000), Kyoto, Japan (2001), Singapore (2002), Roma, Italy (2003), Brisbane, Australia (2004), New York, USA (2005), Wuhan, China (2006), Nancy, France (2007), Auckland, New Zealand (2008), Poznan, Poland (2009), Hong Kong, China (2010), and Sydney, Australia (2011). The proceedings of WISE 2012 will be published in 2 separate volumes by Springer in its Lecture Notes in Computer Science series, with best papers to be recommended for publication in special issues of international journals (including World Wide Web). Topics of interests include but are not limited to: * Cloud Computing * Discovering Social Web structures and models * Deep/Hidden Web; * Event Processing and Event-driven Systems; * Evolution and temporal analysis of the Social Web; * Integration of the Web and Internet-connected Objects / IoT; * Linked Open Data; * Peer-Computing; * Rich Web UI; * Search, Text and media extraction, clustering and classification of the Social Web * Semantic Web; * Social web and Applications; * Web Agents and Web Intelligence; * Web-based Applications (e.g., Auction and Negotiation, e-Commerce, e-Government, e-Learning, etc.); * Web-based Business Processes and Web Services; * Web-based Enterprise Systems and Transactions; * Web Data Integration; * Web Data Mashup; * Web Data Models; * Web Information Retrieval; * Web Metrics and Performance; * Web Mining and Web Warehousing; * Web Monitoring and Management; * Web Security and Trust Management; * Web Tools and Languages; * Web Visualisation; and * XML and Semi-structured Data. Important Dates --------------- * Research Paper Abstract Submission: 15th June 2012 * Research Paper Submission: 22nd June 2012 * Demonstration Paper Submission: 22nd June 2012 * Paper Notification of Acceptance: 3rd August 2012 * Accepted Paper Camera-ready: 31st August 2012 * Workshop Proposal Submission: 18th May 2012 * Workshop Proposal Notification: 25th May 2012 Publication ----------- Submitted papers will be carefully evaluated based on originality, significance, technical soundness, and clarity of exposition. All papers will be refereed by at least three members of the program committee. Participants submitting demos are required to submit a 2-page short paper describing the demo content, research, relevance and importance to the web information system community. For demos, participants will be able to showcase the demo during the conference. All submitted papers MUST be formatted according to the author guidelines provided by Springer LNCS format and MUST NOT exceed 14 pages for research papers and 2 pages for demo papers. Submissions must be done via Easychair: https://www.easychair.org/account/signin.cgi?conf=wise2012 A special issue of WWWJ is scheduled for extended versions of some selected papers from the WISE2012 conference. Organizing Committee -------------------- * General Co-Chairs: Yanchun Zhang, Victoria University, Australia George Angelos Papadopoulos, University of Cyprus, Cyprus * PC Co-Chairs: Xiaoyang (Sean) Wang, Fudan University, China Isabel Cruz, The University of Illinois at Chicago Alex Delis, University of Athens, Greece * WISE Challenge Program/Track Co-Chairs: Xiaofang Zhou, University of Queensland, Australia Weining Qian, East China Normal University, China * Workshop Co-Chairs: Armin Haller, CSIRO, Australia Zhisheng Huan, Vrije University Amsterdam, The Netherlands * Demonstration Papers Vo-Chairs: Georgia Kapitsaki, University of Cyprus, Cyprus Gustavo Rossi, La Plata National University, Argentina * Publication Chair: Guangyan Huang, Victoria University, Australia * Publicity Co-Chairs: Demetris Zeinalipour-Yatzi, University of Cyprus, Cyprus Jing Yang, Graduate University, Chinese Academy of Sciences, China * Local Arrangement Chair: Petros Stratis, Easyconferences Ltd. -------------------------------------------------------------------- This is not SPAM. If you want to be removed from this list, please send an email to [announce&lt; at &gt;cs.ucy.ac.cy] with the single word 'remove' in the subject of the email. _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Announcements 2012-05-08T13:19:34 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20746 <pre>------------- Apologies for multiple cross-postings --------------------- Call for Papers DEADLINE EXTENDED TO May 18th, 2012 The Sixth IEEE International Conference on Semantic Computing (IEEE ICSC 2012) September 19th- 21st, 2012 Palermo, Italy http://www.ieee-icsc.org The field of Semantic Computing addresses the derivation of semantic information from content and the connection of semantics to knowledge, where "content" may be anything including video, audio, text, processes, services, hardware, networks, etc. The Sixth IEEE International Conference on Semantic Computing (ICSC 2012) continues to foster the growth of a new research community. The conference builds on the success of the past ICSC conferences as an international forum for researchers and practitioners to present research that advances the state of the art and practice of Semantic Computing, as well as identifying emerging research topics and defining the future of the field. The event is located in Palermo, Italy on the Piazza Borsa Hotel. The technical program of ICSC 2012 includes workshops, invited keynotes, paper presentations, panel discussions, industrial 'show and tells', demonstrations, and more. Submissions of high-quality papers describing mature results or ongoing work are invited. SUBMISSIONS Authors are invited to submit Regular Papers (8-page technical paper), Short Papers (4-page technical paper), Demonstration Papers and Posters (2 page technical paper), and Workshop and Special Session Proposals. More information is available on the ICSC 2012 web page. The Conference Proceedings will be published by IEEE Computer Society Press. Distinguished quality papers presented at the conference will be selected for publication in internationally renowned journals. AREAS OF INTEREST INCLUDE (but are not limited to): Semantics based Analysis Natural language processing Image and video analysis Audio and speech analysis Data and web mining Behavior of software, services and networks Services and networks Security Privacy Analysis of social networks Semantic Integration Metadata and other description languages Database schema integration Ontology integration Interoperability and service integration Semantic programming languages and software engineering Semantic system design and synthesis Applications using Semantics Search engines and question answering Semantic web services Content-based multimedia retrieval and editing Context-aware networks of sensors, devices and applications Devices and applications Digital library applications Machine translation Music description Medicine and Biology GIS systems and architecture Semantic Interfaces Natural language interfaces Multimodal interfaces Human centered computing IMPORTANT DATES: May 18th, 2012: Regular &amp; Short Paper Submission (EXTENDED) May 18th, 2012: Demo Descriptions &amp; Posters (EXTENDED) May 18th, 2012: Industry Track Papers (EXTENDED) June 28th, 2012: Notification Date July 15th, 2012: Camera-Ready &amp; Registration ------------------------------------------------------------- Note: 1. Every paper accepted for publication in the Proceedings of ICSC 2012 MUST be presented during the conference. 2. Every paper accepted for ICSC 2012 MUST have attached to it at least one registration at the full member/nonmember rate. Thus, for a paper for which all authors are students, one student author will be required to register at the full registration rate. _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Claudia d'Amato 2012-05-08T11:16:03 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20742 <pre> I try to do this bat, that code have an Exception in thread "main" java.lang.OutOfMemoryError: Java heap space. Waht's happen hear. String ns= "http://www.owl-ontologies.com/suelos.owl#"; OntModel model = null; model = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM_RULE_INF); java.io.InputStream in = FileManager.get().open("D://suelos.owl"); if (in == null) { throw new IllegalArgumentException("Archivo no encontrado"); } model.read(in, ""); ExtendedIterator it = model.listNamedClasses(); String s = ""; while(it.hasNext()){ OntClass c = (OntClass)it.next(); s = c.getComment(null); System.out.println(s); } -- View this message in context: http://protege-ontology-editor-knowledge-acquisition-system.136.n4.nabble.com/What-happen-with-this-Jena-have-a-bug-tp4616679.html Sent from the Protege Discussion mailing list archive at Nabble.com. _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Jorge 2012-05-08T06:24:42 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20741 <pre> I try to do this bat, that code have an Exception in thread "main" java.lang.OutOfMemoryError: Java heap space. Waht's happen hear. String ns= "http://www.owl-ontologies.com/suelos.owl#"; OntModel model = null; model = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM_RULE_INF); java.io.InputStream in = FileManager.get().open("D://suelos.owl"); if (in == null) { throw new IllegalArgumentException("Archivo no encontrado"); } model.read(in, ""); ExtendedIterator it = model.listNamedClasses(); String s = ""; while(it.hasNext()){ OntClass c = (OntClass)it.next(); s = c.getComment(null); System.out.println(s); } -- View this message in context: http://protege-ontology-editor-knowledge-acquisition-system.136.n4.nabble.com/I-have-problem-wiht-this-tp4616675.html Sent from the Protege Discussion mailing list archive at Nabble.com. _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Jorge 2012-05-08T06:22:39 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20740 <pre>Hi All, I'm novice user in Protege application. Is it possible to import a XSD file (XML schema) to OWL? Is there a Protege plugin? Thank you, Flavio. _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Flavio Seixas 2012-05-08T00:53:08 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20738 <pre>======================================================== 6th Int'l Workshop on Modular Ontologies (WoMO) Graz, Austria, July 24, 2012 held in conjunction with FOIS 2012 --- Third Call for Papers --- ======================================================== Submission deadline: May 11, 2012 ======================================================== INVITED SPEAKERS: * Thomas Eiter, Vienna University of Technology, Austria Title TBA * Luciano Serafini, Fondazione Bruno Kessler, Trento, Italy Multi context logics: a formal support for structuring knowledge and beliefs (Tentative title) http://www.informatik.uni-bremen.de/~ts/womo2012 MODULARITY, studied for years in software engineering, allows mechanisms for easy and flexible reuse, generalization, structuring, maintenance, design patterns, and comprehension. In formal and applied ontology, modularity is central to reducing the complexity of designing and understanding ontologies, and to facilitating ontology verification, reasoning, development, maintenance and integration. Recent research on ontology modularity shows substantial progress in foundations of modularity, techniques of modularization and modular development, distributed reasoning and empirical evaluation. These results provide a solid foundation and exciting prospects for further research and development. The workshop continues a series of successful events that have been an excellent venue for practitioners and researchers to discuss latest and current work; the most recent WoMOs were held at FOIS 2010 and ESSLLI 2011. TOPICS include, but are not limited to: - What is modularity?: kinds of modules and their properties; modules vs. contexts; design patterns; granularity of representation; - Logical/foundational studies: conservativity; modular ontology languages; reconciling inconsistencies across modules; formal structuring of modules; heterogeneity; - Algorithmic approaches: distributed and incremental reasoning; modularization and module extraction; sharing, linking, reuse; privacy; evaluation of modularization approaches; complexity of reasoning; implemented systems; - Applications: semantic web; life sciences; bio-ontologies; natural language processing; space and time; ambient intelligence; social intelligence; collaborative ontology development and ontology versioning. IMPORTANT DATES Paper Submission: May 11, 2012 Notification: June 12, 2012 Camera ready: July 1, 2012 Workshop: July 24, 2012 SUBMISSION GUIDELINES: We welcome submissions on modularity in a broad sense. The workshop is open to papers of theoretical or practical nature. Submissions should be of up to 11 pages in length, formatted according to Springer LNCS style (see http://www.springer.com/comp/lncs/Authors.html), prepared in PDF format and submitted no later than May 11, 2012, through the EasyChair Submission System (see http://www.easychair.org/conferences/?conf=womo2012). Submitted papers will be peer-reviewed by members of the program committee. Accepted papers will be made available in the proceedings to be published electronically in the CEUR Workshop Proceedings series (see http://www.ceur-ws.org). (Find the WoMO 2010 and 2011 proceedings here http://www.booksonline.iospress.nl/Content/View.aspx?piid=16268 and http://www.booksonline.iospress.nl/Content/View.aspx?piid=20369) WORKSHOP CHAIRS: Thomas Schneider, University of Bremen, Germany Dirk Walther, Technical University of Madrid (UPM), Spain PROGRAM COMMITTEE: Kenneth Baclawski, Northeastern University, Boston, MA, USA Stefano Borgo, Italian National Research Council, Trento, Italy Oscar Corcho, Universidad Politecnica de Madrid, Spain Bernardo Cuenca Grau, University of Oxford, UK Mike Dean, Raytheon BBN Technologies, Ann Arbor, MI, USA Silvio Ghilardi, Universita degli Studi di Milano, Italy Michael Gruninger, University of Toronto, Canada Janna Hastings, EMBL-EBI, Cambridge, UK Robert Hoehndorf, University of Cambridge, UK Boris Konev, University of Liverpool, UK Roman Kontchakov, Birkbeck College, London, UK Thomas Meyer, Meraka Institute, CSIR, Pretoria, South Africa Till Mossakowski, University of Bremen, Germany Immanuel Normann, Birkbeck College, London, UK Leo Obrst, MITRE, McLean, VA, USA Adrian Paschke, Free University of Berlin, Germany David Perez del Rey, Universidad Politecnica de Madrid, Spain Uli Sattler, University of Manchester, UK Luciano Serafini, Fondazione Bruno Kessler, Trento, Italy _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> WoMO 2012 2012-05-07T15:06:25 http://comments.gmane.org/gmane.comp.misc.ontology.protege.general/20737 <pre> VISITING ACADEMIC POSITIONS DEPARTMENT OF COMPUTER SCIENCE UNIVERSITY OF CYPRUS The Department of Computer Science at the University of Cyprus has a number of vacancies for Visiting Academics at the ranks of Lecturer, Assistant, Associate, and Full Professor. Applications are being accepted in all areas, but we are particularly interested in: Theoretical Computer Science / Security / Visual Computing / Computer Games / Human Computer Interaction / Software Engineering / Computer Networks / Data Management A visiting appointment is for one semester (Spring Semester: 15 Jan - 31 May; Fall Semester: 1 Sept - 31 Dec), but can be renewed for up to four semesters. Applicants should hold a Ph.D. in a relevant subject and BE FLUENT IN GREEK (both of these requirements are mandatory). The monthly gross salary for these positions is (in EUR): Visiting Academic Professor: 3.845,84 EUR Visiting Academic Associate Professor: 3.456,98 EUR Visiting Academic Assistant Professor: 3.279,45 EUR Visiting Academic Lecturer: 2.860,41 EUR Presently, the Department is seeking applications for the academic year 2012-2013. The processing of applications has started and will continue until all the available positions have been filled. Anyone wishing to apply should send: I) a full CV, and II) a letter stating for which specific area they are interested in and the semester(s) for which they are available, to the following address (the deadline for receiving applications is the 25th May 2012): The Chairperson Department of Computer Science University of Cyprus P.O. Box 20537 CY-1678 Nicosia, CYPRUS For more details and other information, interested individuals may contact the Chairperson of the Department of Computer Science: Professor Marios D. Dikaiakos Tel: +357-22-892669 Fax: +357-22-892724 E-mail: chair&lt; at &gt;cs.ucy.ac.cy -------------------------------------------------------------------- This is not SPAM. If you want to be removed from this list, please send an email to [announce&lt; at &gt;cs.ucy.ac.cy] with the single word 'remove' in the subject of the email. _______________________________________________ protege-discussion mailing list protege-discussion&lt; at &gt;lists.stanford.edu https://mailman.stanford.edu/mailman/listinfo/protege-discussion Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 </pre> Announcements 2012-05-07T14:38:12 Search the mailing list at Gmane query http://search.gmane.org/?group=$group=gmane.comp.misc.ontology.protege.general