gmane.comp.python.enthought.devel

Re: Installing ETS-3.0.3 in Sage

Jaap Spies — 2008-12-02T01:43:52

Yes. Ok, I'm really frustrated that with a standard configuration in a standard OS (Fedora 9 and Fedora 10) things are so difficult. I'm not only refering to ETS but also to Jmol, the 3D include for Sage (I prefer Mayavi2 :)!) Ok, just before I go to sleep (2.30 AM local time) [jaap< at >paix sage-3.2.1.rc0]$ locate "*site.cfg" /etc/a2ps-site.cfg /home/jaap/sage-3.0.4.alpha1/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-2.10/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-2.10.3/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-2.10.4/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-2.11/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-2.8.15/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-3.0/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-3.0.1/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-3.0.2/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-3.0.3/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-3.0.4/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-3.0.6/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-3.1.1/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-3.1.2/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-3.1.3/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-3.1.4/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-3.2/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-3.2.1.alpha1/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-3.2.1.alpha2/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /home/jaap/work/downloads/sage-3.2.1.rc0/local/lib/python2.5/site-packages/numpy/distutils/site.cfg /usr/local/sage/local/lib/python2.5/site-packages/numpy/distutils/site.cfg [jaap< at >paix sage-3.2.1.rc0]$ This surprises me somehow :) [jaap< at >paix sage-3.2.1.rc0]$ python Python 2.5.2 (r252:60911, Nov 29 2008, 14:50:32) [GCC 4.3.0 20080428 (Red Hat 4.3.0-8)] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> from numpy.distutils import system_info >>> print system_info.default_x11_lib_dirs ['/usr/X11R6/lib', '/usr/X11/lib', '/usr/lib'] >>> print system_info.default_x11_include_dirs ['/usr/X11R6/include', '/usr/X11/include', '/usr/include'] >>> print system_info.default_lib_dirs ['/home/jaap/downloads/sage-3.2.1.rc0/local/lib', '/usr/local/lib', '/usr/lib'] >>> print system_info.default_include_dirs ['/usr/local/include', '/usr/include', '/home/jaap/downloads/sage-3.2.1.rc0/local/include'] >>> Jaap

Re: Installing ETS-3.0.3 in Sage

Robert Kern — 2008-12-02T01:20:43

I've looked at the numpy-1.2.0.p0.spkg, and there doesn't seem to be anything suspicious. Is that the version of numpy you have installed? This file will tell numpy.distutils (and consequently Enable's setup scripts) to look in those locations for the X11 libraries and headers and ignore the defaults. The defaults appear to be broken in your installation; I don't know why. If Sage's numpy has been altered somehow to not look in the default locations for X11, then the user will need to provide a ~/.numpy-site.cfg file to tell it. We use numpy.distutils to build the extension modules in Enable. In particular, we use its configuration system to discover where the X11 libraries are located. There are defaults set in that module that should have discovered your X11 libraries. I'm not really sure why they are different. Let's check a couple of other things. At the shell: $ locate "*site.cfg" from numpy.distutils import system_info print system_info.default_x11_lib_dirs print system_info.default_x11_include_dirs print system_info.default_lib_dirs print system_info.default_include_dirs

Re: Installing ETS-3.0.3 in Sage

Jaap Spies — 2008-12-02T00:51:25

/lib', 'search_static_first': '0'} I asked around, but with no reslut yet. Don't know. How will this help installing ets with my install-pkg? Not only for me, but also for the person who downloads this package? To be honnest I had no idea that numpy is causing this trouble! Jaap

Re: Installing ETS-3.0.3 in Sage

Robert Kern — 2008-12-02T00:31:26

Okay, that's just odd. Did the Sage packager of numpy modify numpy/distutils/system_info.py at all? Anyways, the workaround is to make a file ~/.numpy-site.cfg with the contents [x11] library_dirs=/usr/lib include_dirs=/usr/include

Re: Installing ETS-3.0.3 in Sage

Jaap Spies — 2008-12-02T00:28:10

[jaap< at >paix sage-3.2.1.rc0]$ ./sage -wthread ---------------------------------------------------------------------- | Sage Version 3.2.1.rc0, Release Date: 2008-11-29 | | Type notebook() for the GUI, and license() for information. | ---------------------------------------------------------------------- sage: from numpy.distutils.system_info import x11_info sage: x = x11_info() sage: print x.cp.defaults() {'libraries': '', 'src_dirs': '.:/usr/local/src', 'include_dirs': '/home/jaap/downloads/sage-3.2.1.rc0/local/include', 'library_dirs': '/home/jaap/downloads/sage-3.2.1.rc0/local/lib', 'search_static_first': '0'} sage: print x.cp._sections {'x11': {}} sage: print x.library_extensions() ['.so', '.a'] sage: Jaap

Re: Installing ETS-3.0.3 in Sage

Robert Kern — 2008-12-02T00:20:08

Also print x.library_extensions()

Re: Installing ETS-3.0.3 in Sage

Robert Kern — 2008-12-02T00:18:49

... Hmm, I don't see anything suggestive there. Can you run the following for me? from numpy.distutils.system_info import x11_info x = x11_info() print x.cp.defaults() print x.cp._sections

Re: Installing ETS-3.0.3 in Sage

Jaap Spies — 2008-12-02T00:14:49

I run the install scipt under the sage env: AS=as LDFLAGS= AR=ar SSH_AGENT_PID=2641 HOSTNAME=paix RHOME=/home/jaap/downloads/sage-3.2.1.rc0/local/lib/R UNAME=Linux TERM=xterm SHELL=/bin/bash SAGE_SERVER=http://www.sagemath.org/ SAGE_ORIG_LD_LIBRARY_PATH_SET=True XDG_SESSION_COOKIE=a70ed397301faa017c5004ce483484d2-1228059172.9449-811211155 HISTSIZE=1000 WISECONFIGDIR=/usr/share/wise2/ SAGE_DATA=/home/jaap/downloads/sage-3.2.1.rc0/data LIBRARY_PATH=/home/jaap/downloads/sage-3.2.1.rc0/local/lib/ MKDIR=mkdir GTK_RC_FILES=/etc/gtk/gtkrc:/home/jaap/.gtkrc-1.2-gnome2 WINDOWID=31457864 QTDIR=/usr/lib/qt-3.3 SHAREDFLAGS=-fPIC QTINC=/usr/lib/qt-3.3/include GTK_MODULES=gnomebreakpad DOT_SAGE=/home/jaap/.sage/ USER=jaap LD_LIBRARY_PATH=/home/jaap/downloads/sage-3.2.1.rc0/local/lib/R/lib:/home/jaap/downloads/sage-3.2.1.rc0/local/lib/openmpi:/home/jaap/downloads/sage-3.2.1.rc0/local/lib/:/usr/lib/xorg LIBGL_DRIVERS_PATH=/usr/lib/dri LS_COLORS=no=00:fi=00:di=00;34:ln=00;36:pi=40;33:so=00;35:do=00;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:tw=30;42:ow=34;42:st=37;44:ex=00;32:*.cmd=00;32:*.exe=00;32:*.com=00;32:*.btm=00;32:*.bat=00;32:*.sh=00;32:*.csh=00;32:*.tar=00;31:*.tgz=00;31:*.svgz=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.lzma=00;31:*.zip=00;31:*.z=00;31:*.Z=00;31:*.dz=00;31:*.gz=00;31:*.bz2=00;31:*.tbz2=00;31:*.bz=00;31:*.tz=00;31:*.deb=00;31:*.rpm=00;31:*.jar=00;31:*.rar=00;31:*.ace=00;31:*.zoo=00;31:*.cpio=00;31:*.7z=00;31:*.rz=00;31:*.jpg=00;35:*.jpeg=00;35:*.gif=00;35:*.bmp=00;35:*.pbm=00;35:*.pgm=00;35:*.ppm=00;35:*.tga=00;35:*.xbm=00;35:*.xpm=00;35:*.tif=00;35:*.tiff=00;35:*.png=00;35:*.mng=00;35:*.pcx=00;35:*.mov=00;35:*.mpg=00;35:*.mpeg=00;35:*.m2v=00;35:*.mkv=00;35:*.ogm=00 ;35:*.mp4=00;35:*.m4v=00;35:*.mp4v=00;35:*.vob=00;35:*.qt=00;35:*.nuv=00;35:*.wmv=00;35:*.asf=00;35:*.rm=00;35:*.rmvb=00;35:*.flc=00;35:*.avi=00;35:*.fli=00;35:*.gl=00;35:*.dl=00;35:*.xcf=00 ;35:*.xwd=00;35:*.yuv=00;35:*.svg=00;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36: CUR=/home/jaap/downloads/sage-3.2.1.rc0 SSH_AUTH_SOCK=/tmp/keyring-PrJIPk/ssh GNOME_KEYRING_SOCKET=/tmp/keyring-PrJIPk/socket SESSION_MANAGER=local/unix:< at >/tmp/.ICE-unix/2624,unix/unix:/tmp/.ICE-unix/2624 SAGE_LOCAL=/home/jaap/downloads/sage-3.2.1.rc0/local SAGE_STARTUP_FILE=/home/jaap/.sage//init.sage RM=rm DESKTOP_SESSION=gnome PATH=/usr/local/sage:/home/jaap/downloads/sage-3.2.1.rc0:/home/jaap/downloads/sage-3.2.1.rc0/local/bin:/usr/local/sage:/usr/local/sage:/usr/lib/qt-3.3/bin:/usr/kerberos/bin:/usr/lib/ccache:/usr/local/bin:/usr/bin:/bin:/home/jaap/bin:/usr/local/MuPAD/share/bin:/usr/local/maple9/bin MAIL=/var/spool/mail/jaap LD=ld PWD=/home/jaap/downloads/sage-3.2.1.rc0 INPUTRC=/etc/inputrc MV=mv KDE_IS_PRELINKED=1 GNOME_KEYRING_PID=2623 LANG=en_US.UTF-8 __sage__= GDM_LANG=en_US.UTF-8 KDEDIRS=/usr SAGE_ROOT=/home/jaap/downloads/sage-3.2.1.rc0 PYTHONHOME=/home/jaap/downloads/sage-3.2.1.rc0/local SAGE_PACKAGES=/home/jaap/downloads/sage-3.2.1.rc0/spkg CP=cp GDMSESSION=gnome LN=ln SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass CXX=g++ HOME=/home/jaap SHLVL=5 SDL_AUDIODRIVER=esd MAKE=make GNOME_DESKTOP_SESSION_ID=Default LOGNAME=jaap PYTHONPATH=:/home/jaap/downloads/sage-3.2.1.rc0/local/lib/python SAGE_ORIG_LD_LIBRARY_PATH=/usr/lib/xorg CVS_RSH=ssh QTLIB=/usr/lib/qt-3.3/lib GPHELP=/home/jaap/downloads/sage-3.2.1.rc0/local/bin/gphelp DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-lq4GZQEcPM,guid=4b4b8a29bfcf90c88dceda1a4932b225 LESSOPEN=|/usr/bin/lesspipe.sh %s RANLIB=ranlib MATPLOTLIBRC=/home/jaap/.sage// DISPLAY=:0.0 CC=gcc QT_PLUGIN_PATH=/usr/lib/kde4/plugins CHMOD=chmod GP_DATA_DIR=/home/jaap/downloads/sage-3.2.1.rc0/local/share/pari SAGE_TESTDIR=/home/jaap/downloads/sage-3.2.1.rc0/tmp TOUCH=touch G_BROKEN_FILENAMES=1 GPDOCDIR=/home/jaap/downloads/sage-3.2.1.rc0/local/share/pari/doc SAGE64=no XAUTHORITY=/var/run/gdm/auth-cookie-XXQ62ULU-for-jaap COLORTERM=gnome-terminal _=/usr/bin/env [jaap< at >paix sage-3.2.1.rc0]$ Jaap

Re: Installing ETS-3.0.3 in Sage

Robert Kern — 2008-12-02T00:04:44

And there's the problem. Do you have a site.cfg defined somewhere? What are your environment variables?

Re: Installing ETS-3.0.3 in Sage

Jaap Spies — 2008-12-02T00:02:42

sage: from numpy.distutils.system_info import x11_info sage: x = x11_info() sage: print x.get_lib_dirs() ['/home/jaap/downloads/sage-3.2.1.rc0/local/lib'] sage: print x.get_include_dirs() ['/home/jaap/downloads/sage-3.2.1.rc0/local/include'] sage: print x.check_libs('/usr/lib', ['X11'], []) {'libraries': ['X11'], 'library_dirs': ['/usr/lib']} sage: print x.combine_paths('/usr/include', 'X11/X.h') ['/usr/include/X11/X.h'] sage: Jaap

Re: Installing ETS-3.0.3 in Sage

Robert Kern — 2008-12-01T23:57:38

Looks right. Show me the result of the following script: from numpy.distutils.system_info import x11_info x = x11_info() print x.get_lib_dirs() print x.get_include_dirs() print x.check_libs('/usr/lib', ['X11'], []) print x.combine_paths('/usr/include', 'X11/X.h')

Re: Installing ETS-3.0.3 in Sage

Chris Casey — 2008-12-01T23:47:32

On Mon, 2008-12-01 at 17:35 -0600, Robert Kern wrote: I thought it was /usr/X11R6/lib64...?

Re: Installing ETS-3.0.3 in Sage

Jaap Spies — 2008-12-01T23:40:37

Here in 32 bits in /usr/lib: [jaap< at >paix lib]$ ls libX* libX11.so libXfixes.so.3 libXrender.so.1 libX11.so.6 libXfixes.so.3.1.0 libXrender.so.1.3.0 libX11.so.6.2.0 libXfontcache.so libXRes.so libX11-xcb.so libXfontcache.so.1 libXRes.so.1 libX11-xcb.so.1 libXfontcache.so.1.0.0 libXRes.so.1.0.0 libX11-xcb.so.1.0.0 libXfont.so libXss.so libXau.so libXfont.so.1 libXss.so.1 libXau.so.6 libXfont.so.1.4.1 libXss.so.1.0.0 libXau.so.6.0.0 libXft.so libXTrap.so libXaw3d.so libXft.so.2 libXTrap.so.6 libXaw3d.so.7 libXft.so.2.1.2 libXTrap.so.6.4.0 libXaw3d.so.7.0 libXinerama.so libXt.so libXaw7.so libXinerama.so.1 libXt.so.6 libXaw7.so.7 libXinerama.so.1.0.0 libXt.so.6.0.0 libXaw7.so.7.0.0 libXi.so libXtst.so libXaw.so libXi.so.6 libXtst.so.6 libXaw.so.7 libXi.so.6.0.0 libXtst.so.6.1.0 libXcomposite.so libXm.so libXvMC.so libXcomposite.so.1 libXm.so.2 libXvMC.so.1 libXcomposite.so.1.0.0 libXm.so.2.0.1 libXvMC.so.1.0.0 libXcursor.so libXmu.so libXvMCW.so libXcursor.so.1 libXmu.so.6 libXvMCW.so.1 libXcursor.so.1.0.2 libXmu.so.6.2.0 libXvMCW.so.1.0.0 libXdamage.so libXmuu.so libXv.so libXdamage.so.1 libXmuu.so.1 libXv.so.1 libXdamage.so.1.1.0 libXmuu.so.1.0.0 libXv.so.1.0.0 libXdmcp.so libXpm.so libXxf86dga.so libXdmcp.so.6 libXpm.so.4 libXxf86dga.so.1 libXdmcp.so.6.0.0 libXpm.so.4.11.0 libXxf86dga.so.1.0.0 libXevie.so libXp.so libXxf86misc.so libXevie.so.1 libXp.so.6 libXxf86misc.so.1 libXevie.so.1.0.0 libXp.so.6.2.0 libXxf86misc.so.1.1.0 libXext.so libXrandr.so libXxf86vm.so libXext.so.6 libXrandr.so.2 libXxf86vm.so.1 libXext.so.6.4.0 libXrandr.so.2.1.0 libXxf86vm.so.1.0.0 libXfixes.so libXrender.so [jaap< at >paix lib]$ Nothing special I suppose? Jaap

Re: Installing ETS-3.0.3 in Sage

Robert Kern — 2008-12-01T23:35:30

On 64-bit platforms, it keeps the libraries in /usr/lib64/ instead.

Re: Installing ETS-3.0.3 in Sage

Jaap Spies — 2008-12-01T23:33:21

On the standard place, I suppose. Where else would Fedora keep them? Jaap Ok, I'll look into that.

Re: Installing ETS-3.0.3 in Sage

Robert Kern — 2008-12-01T23:24:28

And that's your problem. Where are your X11 libraries and headers?

Re: Installing ETS-3.0.3 in Sage

Jaap Spies — 2008-12-01T23:24:13

[jaap< at >paix sage-3.2.1.rc0]$ ipython sage: from numpy.distutils.system_info import get_info sage: get_info('x11') _2 = {} Jaap

Re: Installing ETS-3.0.3 in Sage

Jaap Spies — 2008-12-01T23:20:26

Re: Installing ETS-3.0.3 in Sage

bryce hendrix — 2008-12-01T23:15:07

_______________________________________________ Enthought-dev mailing list Enthought-dev-oRDGkvazHdacsI7C1d+pp9BPR1lH4CV8< at >public.gmane.org https://mail.enthought.com/mailman/listinfo/enthought-dev

Re: Installing ETS-3.0.3 in Sage

Robert Kern — 2008-12-01T23:12:43

Can you show me the output of the following:

Re: Installing ETS-3.0.3 in Sage

Jaap Spies — 2008-12-01T23:10:39

Thanks! Jaap