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    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 4 Messages in 3 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12780</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - ENCODE data on UCSC [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/2ece7d0bd10c435
  - stickleback .2bit file? [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/9e10f27408c36a35
  - BLAT mapping [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/8b82d3ab9c39317f


=============================================================================
Topic: ENCODE data on UCSC
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/t/2ece7d0bd10c435
=============================================================================

---------- 1 of 1 ----------
From: Brian Lee &amp;lt;brianlee&amp;lt; at &amp;gt;soe.ucsc.edu&amp;gt;
Date: May 17 12:39PM -0700
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/msg/7&lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-05-18T18:55:11</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12779">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 9 Messages in 6 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12779</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - ENCODE data on UCSC [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/2ece7d0bd10c435
  - how was the hg19 build built? [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/7647632959579468
  - BLAT mapping [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/8b82d3ab9c39317f
  - DNA View region discrepancy [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/133855d59340764d
  - MySql error? [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/324e5093f787924
  - Track hubs? [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/5361cadce54ba6a2


=============================================================================
Topic: E&lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-05-17T17:57:42</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12778">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 14 Messages in 9 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12778</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - Thanks/Suggestion [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/c4b583abd60eba64
  - mRNA GTF for hg19 [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/73379fb314fa1013
  - Track hubs? [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/5361cadce54ba6a2
  - Help with accessing UCSC Genome Browser [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/aa2a8d5326a3766b
  - Aligning NGS reads to the MHC in humans [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/d342b23b1e857f64
  - Encode experiment matrix [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/8a1d5772c96f708f
  - Two ways of downloading gene annotation files &lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-05-16T18:23:43</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12777">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 11 Messages in 10 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12777</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - refFlat vs. refGene [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/5b1e10de2987ae12
  - Two ways of downloading gene annotation files ? (ref Gene) [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/1ee843fe73eb42a4
  - [encode-help] Mining encode [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/48fa3a1e8262f3aa
  - Digest for genome &amp;lt;at&amp;gt; soe.ucsc.edu - 10 Messages in 9 Topics [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/fec5b3add1b32cce
  - how was the hg19 build built? [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/7647632959579468
  - 1-2-many mapping of RefSeq to UCSC transcript ids [1 Update]
    http://groups.google.com/a/s&lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-05-15T21:09:26</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12776">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 12 Messages in 8 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12776</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - Coordinates on custom tracks [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/d6f3b405c70a9356
  - browser.documentRoot parameter on hg.conf [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/9e1b5a7ea021185e
  - Downloading worm genome WS182 [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/24f0e613f035ac00
  - Changes in TFBS tracks? [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/71680b70e98ccfc9
  - PhastCon scores? [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/97906ef234e7274a
  - Query about Genome coordinates of H3K4me3 marks [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/ebf0df949bb32dd2
  - Ask for &lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-05-14T18:03:37</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12775">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 1 Message in 1 Topic</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12775</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - PhastCon scores? [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/97906ef234e7274a


=============================================================================
Topic: PhastCon scores?
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/t/97906ef234e7274a
=============================================================================

---------- 1 of 1 ----------
From: Jackie Jia Zhou &amp;lt;dr.jzhou&amp;lt; at &amp;gt;gmail.com&amp;gt;
Date: May 10 01:36PM -0700
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/msg/a06a5dde84ecb157

Hi,

I downloaded the phastCon scores for rat with other 8 vertebrates from this
link : http://hgdownload.soe.ucsc.edu/goldenPath/rn4/phastCons9way/
I have a couple of questions regarding the files/scores&lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-05-11T18:32:15</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12774">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 6 Messages in 5 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12774</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - Percent DNase I Hypersensitive [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/e01ba728cff76d25
  - CDS does not start with ATG(140/36558) [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/d512269504518a0e
  - Installing kentsourcetools on Ma OS [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/8af7849333990b35
  - personal Genome SNP format [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/bf92a6c284980fe1
  - moving between hg36 and hg37 versions [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/469b45f15b6d8e91


=============================================================================
Topic: Percent DNase I Hypersensitive
Url: h&lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-05-10T18:21:09</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12773">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 9 Messages in 7 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12773</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - moving between hg36 and hg37 versions [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/469b45f15b6d8e91
  - snp137 (hg19) [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/68ff90061cee3de
  - how to count A,T,G,C per chromosome. [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/e95bc482d8a693a8
  - Linking different hubs in Session file [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/a604656ca48c6c73
  - CDS does not start with ATG(140/36558) [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/d512269504518a0e
  - personal Genome SNP format [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/bf92a6c284980fe1
  - FW: Su&lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-05-09T19:28:33</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12772">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 5 Messages in 5 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12772</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - Linking different hubs in Session file [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/a604656ca48c6c73
  - [ROCKY] - chromosomal location and visualization in UCSC genome browser [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/2e09a9a46451076f
  - Percent DNase I Hypersensitive [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/e01ba728cff76d25
  - How to show only reverse strand motif only? [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/26e886f94e24e62b
  - Location of Sgk1 (rat) [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/95f37c4ee3a250e3


=============================================================================
Topic: &lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-05-08T18:12:15</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12771">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 6 Messages in 5 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12771</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - Location of Sgk1 (rat) [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/95f37c4ee3a250e3
  - FW: Subject: Incorrect annotation of mouse genes uc008apw.1 (Fpr3) and uc008apw.1 (Fpr2) in genomic assembly GRCm38 [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/2c1dbb38a31ca316
  - DNase I percentage [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/3889ccdb089a6711
  - Making ideograms [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/f2eb95c67f96afdd
  - GFF3 vs genePred Starting Location Differences (using gff3ToGenePred) [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/cc4beb17d90ad33c


================================================&lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-05-07T18:33:04</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12770">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 11 Messages in 8 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12770</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - NOR regions on chr13,14,15,21,22 [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/e088da2f75696798
  - GFF3 vs genePred Starting Location Differences (using gff3ToGenePred) [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/cc4beb17d90ad33c
  - [encode-help] Mining encode [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/48fa3a1e8262f3aa
  - BigWig to Bed file format [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/d03955054e246c5d
  - Need some help for CpG information! [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/ae53d0234fccd6cb
  - server not found [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/b6ee0ad46&lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-05-06T17:52:42</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12769">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 1 Message in 1 Topic</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12769</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - Greetings - Help Please! Paul Freiman [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/7fb81ea322dc11ca


=============================================================================
Topic: Greetings - Help Please! Paul Freiman
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/t/7fb81ea322dc11ca
=============================================================================

---------- 1 of 1 ----------
From: Pauline Fujita &amp;lt;pauline&amp;lt; at &amp;gt;soe.ucsc.edu&amp;gt;
Date: May 03 04:52PM -0700
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/msg/dedb327ff9b32db1

Hello Paul,

You might find this tutorial on the Genome Browser to be a useful
starting point:

http://www.openhelix.com/cgi/tutorialInfo.cgi?id=27

In response &lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-05-04T17:05:43</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12768">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 5 Messages in 3 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12768</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - Searching for BACs [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/d9dc25715f94c4fa
  - Removing custom tracks [3 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/c2a7d1394a77ebe0
  - NOR regions on chr13,14,15,21,22 [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/e088da2f75696798


=============================================================================
Topic: Searching for BACs
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/t/d9dc25715f94c4fa
=============================================================================

---------- 1 of 1 ----------
From: Michael Krahn &amp;lt;krahnmichael&amp;lt; at &amp;gt;hotmail.com&amp;gt;
Date: May 03 03:32PM +0200
Url: http://groups.google.com/a/soe.u&lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-05-03T18:52:03</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12767">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 10 Messages in 6 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12767</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - Greetings - Help Please! Paul Freiman [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/7fb81ea322dc11ca
  - failed to create directory ../trash/hgtIdeo" only with multiple custom tracks [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/7f331bcad96d1d24
  - Removing custom tracks [3 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/c2a7d1394a77ebe0
  - Difference in alignments UCSC v/s NCBI for a gene? [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/e83c156bc2826da3
  - ABOUT Mir1954 coordinate [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/c6a5c2437a41fd3
  - Genome coordinate order [1 Update]
    http://groups.google.com/a/soe.ucsc.&lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-05-02T17:11:16</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12766">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 4 Messages in 3 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12766</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - Genome coordinate order [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/22fa25b61211537d
  - ABOUT Mir1954 coordinate [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/c6a5c2437a41fd3
  - SFTP for bigwig/BAM custom tracks [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/f424290f9d170b07


=============================================================================
Topic: Genome coordinate order
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/t/22fa25b61211537d
=============================================================================

---------- 1 of 1 ----------
From: sjammula &amp;lt;sjammula&amp;lt; at &amp;gt;myriad.com&amp;gt;
Date: May 01 10:15AM -0600
Url: http://groups.google.com/a/soe&lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-05-01T17:19:44</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12765">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 16 Messages in 9 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12765</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - "go to genome browser" takes me back to a *different* region [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/ad048a3f22ecd4c2
  - ENCODE mouse RNA-seq data [3 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/c47ffd1b8692c85b
  - ENCODE data on UCSC [3 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/2ece7d0bd10c435
  - Dear doctor [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/3a2bcd9c66bf1a8e
  - BAC clones in GRCm38? [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/aa5408eaae1bdaa7
  - overlay tracks [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/77b3b320f44536d7
  - Tandem repeats for hg19 [2 Updates]
    ht&lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-04-30T19:35:46</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12764">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 9 Messages in 6 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12764</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - Confusion regarding different assemblies [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/2f2d2629ab071045
  - BAC clone end [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/8b780b7cc1feea07
  - Adding custom track to C.elegans genome [2 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/eadb836055c225f7
  - overlay tracks [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/77b3b320f44536d7
  - UCSC In-silico PCR [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/3c86100a2714fefa
  - Dear doctor [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/3a2bcd9c66bf1a8e


===========================================================&lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-04-29T17:48:54</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12763">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 4 Messages in 4 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12763</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - BLAT Queries [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/22b821df7fd35c43
  - want to get the sequence from my selected region [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/c5bc28254c2490fd
  - canFam3 SNPs [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/97db35faae1f7520
  - adding BAM and VCF data as *permanent* tracks [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/bf9f3cc7f826ffba


=============================================================================
Topic: BLAT Queries
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/t/22b821df7fd35c43
=============================================================================

----------&lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-04-27T17:52:03</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12762">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 4 Messages in 4 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12762</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - want to get the sequence from my selected region [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/c5bc28254c2490fd
  - How to get SNP information. [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/18d56790a7d18cea
  - canFam3 SNPs [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/97db35faae1f7520
  - Exon numbering convention followed by UCSC [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/7849a96acbb1ef45


=============================================================================
Topic: want to get the sequence from my selected region
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/t/c5bc28254c2490fd
=========================================&lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-04-26T18:42:12</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12761">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 9 Messages in 5 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12761</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - Exon numbering convention followed by UCSC [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/7849a96acbb1ef45
  - adding BAM and VCF data as *permanent* tracks [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/bf9f3cc7f826ffba
  - JUTE plant transcript for SNPs in exon-intron boundary [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/66157e9a34283987
  - PCR primer serach [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/60b191d050ebfe0b
  - ucsc error [5 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/cc352520f23209b0


=============================================================================
Topic: Exon numbering convention followed &lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-04-25T18:54:53</dc:date>
  </item>
  <item rdf:about="http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12760">
    <title>Digest for genome&lt; at &gt;soe.ucsc.edu - 10 Messages in 5 Topics</title>
    <link>http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/12760</link>
    <description>&lt;pre&gt;=============================================================================
Today's Topic Summary
=============================================================================

Group: genome&amp;lt; at &amp;gt;soe.ucsc.edu
Url: http://groups.google.com/a/soe.ucsc.edu/group/genome/topics

  - Interpretation of score in wgEncodeRegDnaseClusteredV2 [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/34c9313c0c1b3ea2
  - Generating bigwig track issue [4 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/17d0ccbb6ebc0282
  - adding BAM and VCF data as *permanent* tracks [3 Updates]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/bf9f3cc7f826ffba
  - mm10 all-SNPS (in bed format) downloading problem [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/84f81378b0b6e955
  - Using figure in publication [1 Update]
    http://groups.google.com/a/soe.ucsc.edu/group/genome/t/417b1858f4e12fe3


=============================================================================
Topic&lt;/pre&gt;</description>
    <dc:creator>genome&lt; at &gt;soe.ucsc.edu</dc:creator>
    <dc:date>2013-04-24T17:17:20</dc:date>
  </item>
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    <title>Search Engine</title>
    <description>Search the mailing list at Gmane</description>
    <name>query</name>
    <link>http://search.gmane.org/?group=$group=gmane.science.biology.ucscgenome.general</link>
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