gmane.science.biology.adun.scm

Don't compile Analyse subproject if gui=no

Michael Johnston — 2012-11-16T15:11:26

Commit from mjohnston (2012-11-16 16:11 CET)
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Don't compile Analyse subproject if gui=no

  Adun  Plugins/GNUmakefile  1.6

Using ADDITIONAL_LD_FLAGS instead ofADDITIONAL_TOOL_LIBS [...]

Michael Johnston — 2012-09-06T15:08:23

Commit from mjohnston (2012-09-06 17:08 CEST)
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Using ADDITIONAL_LD_FLAGS instead of ADDITIONAL_TOOL_LIBS
This seems to cause the build to fail with very new compilers

  Adun  UL/AdunServer/GNUmakefile.preamble  1.12

Add another messages=yes flag

Michael Johnston — 2012-09-06T14:39:54

Commit from mjohnston (2012-09-06 16:39 CEST)
---------------------

Add another messages=yes flag

  Adun  DistributionTools/Adun.spec  1.11

Output make messages to ease finding problems

Michael Johnston — 2012-09-06T14:18:48

Commit from mjohnston (2012-09-06 16:18 CEST)
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Output make messages to ease finding problems

  Adun  DistributionTools/Adun.spec  1.10

Fix for new gcc 4.6 objc runtime

Michael Johnston — 2012-09-06T12:57:33

Commit from mjohnston (2012-09-06 14:57 CEST)
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Fix for new gcc 4.6 objc runtime

  Adun  ExternalPackages/StepTalk/Modules/ObjectiveC/NSObject+objcadditions.m  1.2

Fix arg error to malloc

Michael Johnston — 2012-09-06T12:23:11

Commit from mjohnston (2012-09-06 14:23 CEST)
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Fix arg error to malloc

  Adun  ExternalPackages/StepTalk/Frameworks/StepTalk/GCCObjcRuntimeSupport.m  1.3

Make compatibile with new runtime [...]

Michael Johnston — 2012-09-06T12:03:27

Commit from mjohnston (2012-09-06 14:03 CEST)
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Make compatibile with new runtime
To be tested

  Adun  ExternalPackages/StepTalk/Frameworks/StepTalk/GCCObjcRuntimeSupport.m  1.2

Fix spelling mistake in header name

Michael Johnston — 2012-09-06T11:03:35

Commit from mjohnston (2012-09-06 13:03 CEST)
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Fix spelling mistake in header name

  Adun  ExternalPackages/StepTalk/Frameworks/StepTalk/ObjcRuntimeSupport.h  1.4

Use __GNU_LIBOBJC__ def to overcome problemdescribed previously

Michael Johnston — 2012-09-06T10:55:27

Commit from mjohnston (2012-09-06 12:55 CEST)
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Use __GNU_LIBOBJC__ def to overcome problem described previously

  Adun  ExternalPackages/StepTalk/Frameworks/StepTalk/ObjcRuntimeSupport.h  1.3

Move doc string so its not printed

Michael Johnston — 2012-09-06T10:54:35

Commit from mjohnston (2012-09-06 12:54 CEST)
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Move doc string so its not printed

  Adun  Tools/GNUmakefile.postamble  1.5

Fix: Provide return value from NSInvocation

Michael Johnston — 2012-09-06T10:14:14

Commit from mjohnston (2012-09-06 12:14 CEST)
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Fix: Provide return value from NSInvocation

  Adun  ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STSmalltalkScriptObject.m  1.5

Fix (to be tested) for gcc 4.6+ [...]

Michael Johnston — 2012-09-06T09:59:52

Commit from mjohnston (2012-09-06 11:59 CEST)
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Fix (to be tested) for gcc 4.6+
To handle change in default objc api header from objc-api to objc-runtime

  Adun  ExternalPackages/StepTalk/Frameworks/StepTalk/ObjcRuntimeSupport.h  1.2

Ensure a var is initialised

Michael Johnston — 2012-09-06T09:54:44

Commit from mjohnston (2012-09-06 11:54 CEST)
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Ensure a var is initialised

  Adun  ExternalPackages/StepTalk/Frameworks/StepTalk/STObjCRuntime.m  1.3

Fix for global installs with gs-make 2.6+ [...]

Michael Johnston — 2012-09-06T08:56:20

Commit from mjohnston (2012-09-06 10:56 CEST)
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Fix for global installs with gs-make 2.6+
Handles the fact that GNUSTEP_HOME is not created if empty

  Adun  Tools/GNUmakefile.postamble  1.4

Increase shifted nb test tolerance from 1E-8 to2E-8. [...]

Michael Johnston — 2012-09-03T13:33:14

Commit from mjohnston (2012-09-03 15:33 CEST)
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Increase shifted nb test tolerance from 1E-8 to 2E-8.
In the test case a single value is 1.07E-8 from finite-diff causing it to fail.
Average difference is 1E-10.

  Adun  Tests/CustomTerm.tests  1.4

BugFix: Fix issue in shifted nonbonded forces [...]

Michael Johnston — 2012-09-03T13:30:58

Commit from mjohnston (2012-09-03 15:30 CEST)
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BugFix: Fix issue in shifted nonbonded forces
Add untested AVX vectorised implementation of nonbonded force-calc

  Adun  Kernel/Base/AdCoulombAndLennardJonesA.c  1.15
  Adun  Kernel/Base/AdCoulombAndLennardJonesB.c  1.10
  Adun  Kernel/Base/AdCoulombAndLennardJonesC.c  1.2

Fixes & mods

Michael Johnston — 2012-09-03T10:27:08

Commit from mjohnston (2012-09-03 12:27 CEST)
---------------------

Fixes & mods

  Adun  DistributionTools/UpdateDocs.sh  1.2

r24 - in /website: ./ search/

Michael Johnston — 2012-09-03T10:25:41

Author: mjohnston
Date: Mon Sep  3 12:25:39 2012
New Revision: 24

URL: http://svn.gna.org/viewcvs/adun?rev=24&view=rev
Log:
Updated docs

Added:
    website/_adun_process_grid_8h_source.html
    website/class_ad_process_grid-members.html
    website/class_ad_process_grid.html
    website/class_ad_process_grid__coll__graph.map
    website/class_ad_process_grid__coll__graph.md5
    website/class_ad_process_grid__coll__graph.png   (with props)
    website/dir_04d2d248e2a4609d25c7d63ea5f8dc72.html
    website/dir_04d2d248e2a4609d25c7d63ea5f8dc72_dep.map
    website/dir_04d2d248e2a4609d25c7d63ea5f8dc72_dep.md5
    website/dir_04d2d248e2a4609d25c7d63ea5f8dc72_dep.png   (with props)
    website/dir_0a6671b16c83b43d46ac29ee78f7f258.html
    website/dir_0a6671b16c83b43d46ac29ee78f7f258_dep.map
    website/dir_0a6671b16c83b43d46ac29ee78f7f258_dep.md5
    website/dir_0a6671b16c83b43d46ac29ee78f7f258_dep.png   (with props)
    website/dir_37fde9230b48a8da7c2655447474563f.html
    website/dir_37fde9230b48a8da7c265544747

Fix format string

Michael Johnston — 2012-08-27T08:37:16

Commit from mjohnston (2012-08-27 10:37 CEST)
---------------------

Fix format string

  Adun  Kernel/Base/AdAmberAngle.c     1.3
  Adun  Kernel/Base/AdEnzymixAngle.c   1.10
  Adun  Kernel/Base/AdHarmonicAngle.c  1.11

Workaround for base 1.22+ message fowarding problem[...]

Michael Johnston — 2012-07-27T15:32:06

Commit from mjohnston (2012-07-27 17:32 CEST)
---------------------

Workaround for base 1.22+ message fowarding problem
Should ensure AdunShell works with 1.22+ in most cases

  Adun  ExternalPackages/StepTalk/Languages/StepTalkSmalltalk/STSmalltalkScriptObject.m  1.4

Update for definition of ADUInteger [...]

Michael Johnston — 2012-07-25T15:09:08

Commit from mjohnston (2012-07-25 17:09 CEST)
---------------------

Update for definition of ADUInteger
Problem was GS_API_VERSION only works if the person compiling defines GS_GNUSTEP_V with the correct version
Otherwise it always returns True.
This meant that the pre 1.18 code was always being used.

  Adun  Kernel/AdunKernel/Headers/AdunKernel/AdunDefinitions.h  1.21