http://permalink.gmane.org/gmane.science.astronomy.fedora hourly 1 1901-01-01T00:00+00:00 http://gmane.org/img/gmane-25t.png http://gmane.org http://permalink.gmane.org/gmane.science.astronomy.fedora/205 <pre>Hi Joseph and all, Joseph Wang &lt;joequant-Re5JQEeQqe8AvxtiuMwx3w&lt; at &gt;public.gmane.org&gt; writes: I used this as a base to get IRAF compiled. Although I did this under Debian, I'd like to share the experiences here: * Removing pkg/vocl/readline/ leaves vocl uncompilable. To fix this, apply shared-readline.patch. * Newer xmlrpc don't have a function xmlrpc_refcount(), which breaks vendor/voclient/libsamp/librxpc compilation. shared-xmlrpc.patch fixes this. * VO is not build. This is fixed with the build-vo.patch. * I patched the build system to consequently use CC and CFLAGS. This is done with compiler-flags.patch. This allows to propagate the default flags set by the build system. Debian likes some hardening flags here, and takes some warnings as errors. The fixes for these errors are in fix_compiler_errors.patch. * Moving the libc header files caused some dependency warnings. They are fixed with the fix-libc-deps.patch. So far, IRAF compiles without errors. For the setup, I have set the $iraf vari</pre> Ole Streicher 2013-06-07T19:33:01 http://permalink.gmane.org/gmane.science.astronomy.fedora/204 <pre> Right. I'll change that (for Debian, however; for Fedora this should be incorporated in Joseph's patch) Best Ole _______________________________________________ Fedora astronomy mailing list astronomy&lt; at &gt;lists.fedoraproject.org http://fedoraproject.org/wiki/SIGs/Astronomy https://admin.fedoraproject.org/mailman/listinfo/astronomy</pre> Olе Streicher 2013-06-05T05:45:19 http://permalink.gmane.org/gmane.science.astronomy.fedora/203 <pre> Wouldn't be safer to use ${HOME}/.local/share/iraf/imdir instead of ${HOME}/.local/share/imdir? Regards, Germán. </pre> Germán A. Racca 2013-06-04T22:02:18 http://permalink.gmane.org/gmane.science.astronomy.fedora/202 <pre>Hi all, one more proposal regarding directory structure: According to the freedeskto.org, the directories imlib$ and cache$ should go into the user's home dir on default: http://standards.freedesktop.org/basedir-spec/basedir-spec-latest.html which leads to a change in mkiraf.csh (see below). This creates and uses the files ${HOME}/.local/share/imdir - as user image directory ${HOME}/.cache/iraf - as user cache dir Best regards Ole --- a/unix/hlib/mkiraf.csh +++ b/unix/hlib/mkiraf.csh &lt; at &gt;&lt; at &gt; -4,7 +4,7 &lt; at &gt;&lt; at &gt; # The following definitions are site dependent. [SITEDEP] -setiraf= "/iraf/iraf" +setiraf= "/usr/share/iraf" setimdir= "/iraf/imdirs" setcachedir= "/iraf/cache" setttymsg =\ &lt; at &gt;&lt; at &gt; -93,16 +93,22 &lt; at &gt;&lt; at &gt; pwd| sed -e "s;.*;s+U_UPARM+&amp;/uparm/+;"&gt;&gt; _sed if (! (-e "$imdir" &amp;&amp; -w "$imdir") ) then - set imdir = HDR$ - whoami| sed -e "s;.*;s+U_IMDIR+${imdir}/+;"&gt;&gt; _sed + if ( ${?XDG_DATA_HOME} == 0 ) then +setenv XDG_DATA_HOME ${HOME}/.local/share + endif + echo "s+U</pre> Olе Streicher 2013-06-04T21:11:56 http://permalink.gmane.org/gmane.science.astronomy.fedora/201 <pre>Hi Joseph, Joseph Wang &lt;joequant&lt; at &gt;gmail.com&gt; writes: I added a few more removals; mostly because of files that are regenerated during the build, and a few executables that were left by the packagers. Best regards Ole --- get-iraf.sh.orig +++ get-iraf.sh &lt; at &gt;&lt; at &gt; -10,12 +10,17 &lt; at &gt;&lt; at &gt; find -name "*.macosx" | xargs rm -rf find -name "*.solaris" | xargs rm -rf find -name "*.a" | xargs rm -rf +find -name "*.e" | xargs rm -rf find -name "*.o" | xargs rm -rf find -name "*.cache" | xargs rm -rf +find -name "*.bak" | xargs rm -rf +find -name "*.orig" | xargs rm -rf +find -name ".DS_Store" | xargs rm -rf #remove finished docs find -name "*.ps" | xargs rm -rf find -name "*.pdf" | xargs rm -rf +rm -rf iraf/tags rm -rf iraf/unix/shlib rm -rf iraf/unix/sun rm -rf iraf/unix/mc68000 &lt; at &gt;&lt; at &gt; -33,13 +38,19 &lt; at &gt;&lt; at &gt; rm -rf iraf/vendor/voclient/libsamp/libxrpc/xmlrpc-c-*/* rm -rf iraf/vendor/voclient/libsamp/libxrpc/share - - # remove most of f2c but keep the f2c.h as the stock f2c.h # is different from fedoras rm -rf ir</pre> Olе Streicher 2013-06-04T20:23:52 http://permalink.gmane.org/gmane.science.astronomy.fedora/200 <pre>At https://dl.dropboxusercontent.com/u/1025783/iraf-2.16-3test.src.rpm Major changes are: * uses local xmlrpc-c * removes external packages (reduces source package from 82M to 52M) _______________________________________________ Fedora astronomy mailing list astronomy&lt; at &gt;lists.fedoraproject.org http://fedoraproject.org/wiki/SIGs/Astronomy https://admin.fedoraproject.org/mailman/listinfo/astronomy</pre> Joseph Wang 2013-06-04T16:52:32 http://permalink.gmane.org/gmane.science.astronomy.fedora/199 <pre>Here is a script that removes the extra files in iraf. The one library that we can probably move to an external library is xmlrpc-c _______________________________________________ Fedora astronomy mailing list astronomy&lt; at &gt;lists.fedoraproject.org http://fedoraproject.org/wiki/SIGs/Astronomy https://admin.fedoraproject.org/mailman/listinfo/astronomy</pre> Joseph Wang 2013-06-02T11:03:17 http://permalink.gmane.org/gmane.science.astronomy.fedora/198 <pre> I am just starting to learn fortran, so I'm not much help. What I would do though is try asking on the gfortran mailing list, where I would hope they would either be able to tell you how to get gfortran to compile it if it is supported, or offer a more modern solution that gfortran does like. The list (called fortran) can be found here: http://gcc.gnu.org/lists.html _______________________________________________ Fedora astronomy mailing list astronomy&lt; at &gt;lists.fedoraproject.org http://fedoraproject.org/wiki/SIGs/Astronomy https://admin.fedoraproject.org/mailman/listinfo/astronomy</pre> Gerald Henriksen 2013-06-01T22:44:18 http://permalink.gmane.org/gmane.science.astronomy.fedora/197 <pre>gfortran supports f77, but I'm not sure that this is good f77. The piece of code is logical Memb(1) integer*2 Memc(1) integer*2 Mems(1) integer Memi(1) integer Meml(1) real Memr(1) double precision Memd(1) complex Memx(1) equivalence (Memb, Memc, Mems, Memi, Meml, Memr, Memd, Memx) common /Mem/ Memd Memi are then used to reference the memory location as pointers. The trouble is that f90 sees this as real arrays. If you have some ideas on how to make this work in gfortran let me know. _______________________________________________ Fedora astronomy mailing list astronomy&lt; at &gt;lists.fedoraproject.org http://fedoraproject.org/wiki/SIGs/Astronomy https://admin.fedoraproject.org/mailman/listinfo/astronomy</pre> Joseph Wang 2013-06-01T14:00:53 http://permalink.gmane.org/gmane.science.astronomy.fedora/196 <pre> gfortran supports f77 as well as the newer versions. _______________________________________________ Fedora astronomy mailing list astronomy&lt; at &gt;lists.fedoraproject.org http://fedoraproject.org/wiki/SIGs/Astronomy https://admin.fedoraproject.org/mailman/listinfo/astronomy</pre> Gerald Henriksen 2013-05-31T22:08:03 http://permalink.gmane.org/gmane.science.astronomy.fedora/195 <pre>I'll spend the weekend tweaking the packages. One thing that would be easy to do is to create a script that would repackage the source iraf code to remove anything unnecessary and we can use that for the base source distribution. Once that's been done, it ought to simplify both the licensing and the build. One other thing on my wish list is to use gfortran for the back end. The problem with this is that there is one f77-ism. f77 allocates a double, int, and string array with one item and then does an equivalence which then creates a shared memory space. I don't know how to do this (or know if it can be done) in f90. On Fri, May 31, 2013 at 8:00 PM, &lt;astronomy-request-TuqUDEhatI4ANWPb/1PvSmm0pvjS0E/A&lt; at &gt;public.gmane.org&gt;wrote: _______________________________________________ Fedora astronomy mailing list astronomy&lt; at &gt;lists.fedoraproject.org http://fedoraproject.org/wiki/SIGs/Astronomy https://admin.fedoraproject.org/mailman/listinfo/astronomy</pre> Joseph Wang 2013-05-31T12:18:39 http://permalink.gmane.org/gmane.science.astronomy.fedora/194 <pre>Hi Sergio and all, Am 30.05.2013 23:47, schrieb Sergio Pascual: Nice to hear :-) When browsing around the iraf sources, I found several "strip" scripts that could be converted to a "shared" install script. Something like TARGET=/usr/share/iraf for j in $(find . -name \*.hlp \ -o -name \*.hd \ -o -name \*.men \ -o -name \*.cl \ -o -name \*.par \ -o -name \*.key \ -o -name \*.dat \ -o -name \*.mip \ -o -name \*.fits \ -o -path ./dev/\* \ | cut -c3-) ; do install -p -D -m 644 $j $TARGET/$j done rm -f $TARGET/dev/tapecap.* $TARGET/dev/README should do the job for all files needed at runtime. These are ~ 20 MB. Yes. If you know someone with assembler experience: as.linuxarm/zsvjmp.s is the file we need. With documentation, I tend to agree -- although I can imagine that the documentation is not strictly needed when running a prefabricated script non-interactively (f.e. on a computing farm). Howe</pre> Ole Streicher 2013-05-31T08:44:19 http://permalink.gmane.org/gmane.science.astronomy.fedora/193 <pre>Hi Ole, I completely agree on trying to coordinate efforts. My comments about the points you rise: * Splitting into smaller packages. As all the .cl, .dat, .par, .key files, etc are shareable between arches I agree that they should go to /usr/share/iraf and in a differente package. Notice that there are still a bunch of files (READMEs, csh scripts, text files with docs about implementation, etc) that are basically not need in the running system and could be removed. Speaking about arches, an ARM port would be very cool... Regarding docs and noao and vo packages, I have my doubts. The docs are used in the internal documentation system (when you type "help" in cl). In my experience, users type "help" all the time. Tasks are complex, with long lists of parameters and you need the doc system to understand what the task does. The noao package contains basic subpackages. CCD processing is in noao.imred.ccdred Long slit spectrosocopy is in noao.twodspec. In fact, I preloaded noao in my login.cl just to avoid</pre> Sergio Pascual 2013-05-30T21:47:07 http://permalink.gmane.org/gmane.science.astronomy.fedora/192 <pre>Hi Joseph, Sergio, I am working on a Debian package for IRAF, so I am following the discussion here closely. I intend to base the Debian package on your work. There are, however, still some issues to be solved. As for other astronomy packages, it would probably be good to coordinate us here a bit, so that the packages match closely, that the Linux fragmentation does not make it too hard to switch between Debian and Fedora. Here are my thoughts for the Debian package. Feel free to ignore them or to discuss them here ;-) : Splitting into smaller packages =============================== Arch-dependent and arch-independent package ------------------------------------------- Most of the files are arch independent; it does not make sense to duplicate them for every architecture. This is important for Debian which has a dozens of official and inofficial ports, but may be an issue for (potential) fedora ports as well. Extending to other architectures seems mainly a problem of the zsvjmp.s file, which already ex</pre> Olе Streicher 2013-05-28T08:54:08 http://permalink.gmane.org/gmane.science.astronomy.fedora/191 <pre>Hi Joseph, very nice, now it works: compiles and the basic things seem to work (display, imstat, etc) I have run "fedora-review" on the rpm. It is an automated tool that checks if the package follows fedora guidelines. Some, if not all, the recomendations my be applied to Mageia. The directory to install must be %{_libdir}/iraf and not %{_datadir}/iraf, as the package is arch dependent After the install there are a bunch of source files remaining under iraf. I have used find -name "*.f" -o -name "*.c" ... -delete to remove them. I have removed also empty files and dirs. fedora-review checks the licenses of the files. Here there are two issues: * There is not a license file for Iraf that I can find. If it is hidden in some doc/doc/doc directory it should really go in the top level directory * The software in iraf is under different licenses. fedora-review checks the files in the source tree and tries to group them under license. The present licenses are: BSD (3 clauses), BSD (4 clauses), GPL v1 or la</pre> Sergio Pascual 2013-05-27T22:23:33 http://permalink.gmane.org/gmane.science.astronomy.fedora/190 <pre>Hi, I am the maintainer of wcslib and wcstools in Debian. In the Debian packages, I patched the wcstools library in that way (libwcstools); not just for the development version but also for the shared library (libwcstools0, since upstream doesn't contain a SONAME yet). It would be nice if we could (independently of the pending upstream decision) agree to use a common naming and SONAME scheme here to make applications more portable, and also to put some pressure to upstream. Best regards Ole Am 03.04.2013 00:48, schrieb Sergio Pascual: _______________________________________________ Fedora astronomy mailing list astronomy&lt; at &gt;lists.fedoraproject.org http://fedoraproject.org/wiki/SIGs/Astronomy https://admin.fedoraproject.org/mailman/listinfo/astronomy</pre> Ole Streicher 2013-05-20T21:34:10 http://permalink.gmane.org/gmane.science.astronomy.fedora/189 <pre> Actually I didn't do nothing advanced. As I said before, I compiled your srpm for Fedora 19 and installed it in a virtual machine running Fedora 19 Beta. I loaded/unloaded some packages to see if Iraf was running fine. Then I rendered a fits image in ds9 from inside Iraf, performed an imstat on that image, and that's all for now :) Nonetheless, in order to get Aladin running I had to install java before. Don't forget that java should be a Requires in the spec file. All the best, Germán. </pre> Germán A. Racca 2013-05-19T00:06:35 http://permalink.gmane.org/gmane.science.astronomy.fedora/188 <pre>Cool. Can you give a step-by-step walkthrough with some sample workflows? I'd like to see how much it works. _______________________________________________ Fedora astronomy mailing list astronomy&lt; at &gt;lists.fedoraproject.org http://fedoraproject.org/wiki/SIGs/Astronomy https://admin.fedoraproject.org/mailman/listinfo/astronomy</pre> Joseph Wang 2013-05-18T16:48:03 http://permalink.gmane.org/gmane.science.astronomy.fedora/187 <pre> Hi Joseph, I've downloaded the srpm and recompiled it for F19 using mock in F18. Then I installed the rpm in F19 beta and it seems to work fine, though it needs java as a Requires because of the VO tools like Aladin. After installing java-1.7.0-openjdk, Aladin opened fine. Thanks for your work! All the best, Germán. </pre> Germán A. Racca 2013-05-18T01:04:31 http://permalink.gmane.org/gmane.science.astronomy.fedora/186 <pre>I've gotten the SRPM to build with mock and uploaded a link to dropbox https://dl.dropboxusercontent.com/u/1025783/iraf-2.16-1.src.rpm On Thu, May 16, 2013 at 7:39 AM, Sergio Pascual &lt;sergiopr-rxtnV0ftBwyoClj4AeEUq9i2O/JbrIOy&lt; at &gt;public.gmane.org&gt;wrote: _______________________________________________ Fedora astronomy mailing list astronomy&lt; at &gt;lists.fedoraproject.org http://fedoraproject.org/wiki/SIGs/Astronomy https://admin.fedoraproject.org/mailman/listinfo/astronomy</pre> Joseph Wang 2013-05-17T16:11:34 http://permalink.gmane.org/gmane.science.astronomy.fedora/185 <pre>Hi Joseph, I haven't managed yet to get iraf built in mock. I create an srpm using the two files you attach and another patch more from your previous mail. I then build the rpm using mock but the compilation fails. Have you used mock to build the srpms? If not, please do so. It's the only way to be sure that the dependencies are handled correctly. I would appreciate a lot if you could upload your working source rpm somewhere so that I can download it and recompile it in my system. And thanks a lot for your hard work. Regards, Sergio 2013/5/7 Joseph Wang &lt;joequant&lt; at &gt;gmail.com&gt;: _______________________________________________ Fedora astronomy mailing list astronomy&lt; at &gt;lists.fedoraproject.org http://fedoraproject.org/wiki/SIGs/Astronomy https://admin.fedoraproject.org/mailman/listinfo/astronomy</pre> Sergio Pascual 2013-05-15T23:39:15 Search the mailing list at Gmane query http://search.gmane.org/?group=$group=gmane.science.astronomy.fedora