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[fink:package-submissions] #4267 jbig2dec-0.11-3

Jack Howarth — 2013-05-24T18:17:28



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** [package-submissions:#4267] jbig2dec-0.11-3**

**Status:** open
**Created:** Fri May 24, 2013 06:17 PM UTC by Jack Howarth
**Last Updated:** Fri May 24, 2013 06:17 PM UTC
**Owner:** Daniel Johnson

Build against libpng15 by patching jbig2dec to use png_get_io_ptr and avoid CVT_PTR. Fix test_jbig2dec.py and re-enable InfoTest. Tested on x86_64 10.6 fink and 10.8 fink with 'fink -m'.


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[fink:package-submissions] #4266 patch-2.7.1-1

Jack Howarth — 2013-05-24T16:34:52

Same patch file as current packaging is used.


Attachment: patch.patch (1.3 kB; application/octet-stream)


---

** [package-submissions:#4266] patch-2.7.1-1**

**Status:** open
**Created:** Fri May 24, 2013 04:34 PM UTC by Jack Howarth
**Last Updated:** Fri May 24, 2013 04:34 PM UTC
**Owner:** Max Horn

The attached packaging for patch-2.7.1-1 updates to the latest upstream release. Tested on x86_64-apple-darwin10 and x86_64-apple-darwin12 with 'fink -m'.


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[fink:package-submissions] #4266 patch-2.7.1-1

Jack Howarth — 2013-05-24T16:34:26



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** [package-submissions:#4266] patch-2.7.1-1**

**Status:** open
**Created:** Fri May 24, 2013 04:34 PM UTC by Jack Howarth
**Last Updated:** Fri May 24, 2013 04:34 PM UTC
**Owner:** Max Horn

The attached packaging for patch-2.7.1-1 updates to the latest upstream release. Tested on x86_64-apple-darwin10 and x86_64-apple-darwin12 with 'fink -m'.


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[fink:package-submissions] #4265 autogen-5.17.4-1

Alexander Hansen — 2013-05-23T00:03:20

- **status**: open --> closed
- **Group**: Awaiting_OK_from_Maintainer --> Added_to_Fink



---

** [package-submissions:#4265] autogen-5.17.4-1**

**Status:** closed
**Created:** Tue May 21, 2013 07:59 PM UTC by Jack Howarth
**Last Updated:** Thu May 23, 2013 12:02 AM UTC
**Owner:** David Fang

The attached packaging updates autogen to the latest 5.17.4 release. It uses --disable-nls to prevent the building of nls support in libopts (which is the behavior of the current release). This is required to avoid testsuite failures due to unresolved symbols for "_libintl_dgettext and _libintl_gettext until we can pinpoint where the linkage problem in the testsuite. Also added autogen.patch and appended LIBS="-L%p/lib" to configure in order to eliminate a failure in the getopt.test. Tested with 'fink -m' on x86_64-apple-darwin12.


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[fink:package-submissions] #4265 autogen-5.17.4-1

David Fang — 2013-05-23T00:02:22

committed to 10.7 tree
(close this item)


---

** [package-submissions:#4265] autogen-5.17.4-1**

**Status:** open
**Created:** Tue May 21, 2013 07:59 PM UTC by Jack Howarth
**Last Updated:** Wed May 22, 2013 11:13 PM UTC
**Owner:** David Fang

The attached packaging updates autogen to the latest 5.17.4 release. It uses --disable-nls to prevent the building of nls support in libopts (which is the behavior of the current release). This is required to avoid testsuite failures due to unresolved symbols for "_libintl_dgettext and _libintl_gettext until we can pinpoint where the linkage problem in the testsuite. Also added autogen.patch and appended LIBS="-L%p/lib" to configure in order to eliminate a failure in the getopt.test. Tested with 'fink -m' on x86_64-apple-darwin12.


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[fink:package-submissions] #4265 autogen-5.17.4-1

Jack Howarth — 2013-05-22T23:13:26

Added use of fink-package-precedence.


Attachment: autogen.info (4.6 kB; application/octet-stream)


---

** [package-submissions:#4265] autogen-5.17.4-1**

**Status:** open
**Created:** Tue May 21, 2013 07:59 PM UTC by Jack Howarth
**Last Updated:** Wed May 22, 2013 10:48 PM UTC
**Owner:** David Fang

The attached packaging updates autogen to the latest 5.17.4 release. It uses --disable-nls to prevent the building of nls support in libopts (which is the behavior of the current release). This is required to avoid testsuite failures due to unresolved symbols for "_libintl_dgettext and _libintl_gettext until we can pinpoint where the linkage problem in the testsuite. Also added autogen.patch and appended LIBS="-L%p/lib" to configure in order to eliminate a failure in the getopt.test. Tested with 'fink -m' on x86_64-apple-darwin12.


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[fink:package-submissions] #4265 autogen-5.17.4-1

David Fang — 2013-05-22T22:48:38

Thanks, Jack.  Oddly, I get a bunch of failures on darwin11.  I saw the same failures before applying your patch and passing LIBS.

http://paste.lisp.org/display/137242#1

Have you ever seen this batch of failing tests?


---

** [package-submissions:#4265] autogen-5.17.4-1**

**Status:** open
**Created:** Tue May 21, 2013 07:59 PM UTC by Jack Howarth
**Last Updated:** Wed May 22, 2013 10:29 PM UTC
**Owner:** David Fang

The attached packaging updates autogen to the latest 5.17.4 release. It uses --disable-nls to prevent the building of nls support in libopts (which is the behavior of the current release). This is required to avoid testsuite failures due to unresolved symbols for "_libintl_dgettext and _libintl_gettext until we can pinpoint where the linkage problem in the testsuite. Also added autogen.patch and appended LIBS="-L%p/lib" to configure in order to eliminate a failure in the getopt.test. Tested with 'fink -m' on x86_64-apple-darwin12.


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[fink:package-submissions] #4265 autogen-5.17.4-1

Jack Howarth — 2013-05-22T22:29:50

Replacement autogen.info without flag-sort BuildDepends entry.


Attachment: autogen.info (4.5 kB; application/octet-stream)


---

** [package-submissions:#4265] autogen-5.17.4-1**

**Status:** open
**Created:** Tue May 21, 2013 07:59 PM UTC by Jack Howarth
**Last Updated:** Wed May 22, 2013 10:28 PM UTC
**Owner:** David Fang

The attached packaging updates autogen to the latest 5.17.4 release. It uses --disable-nls to prevent the building of nls support in libopts (which is the behavior of the current release). This is required to avoid testsuite failures due to unresolved symbols for "_libintl_dgettext and _libintl_gettext until we can pinpoint where the linkage problem in the testsuite. Also added autogen.patch and appended LIBS="-L%p/lib" to configure in order to eliminate a failure in the getopt.test. Tested with 'fink -m' on x86_64-apple-darwin12.


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[fink:package-submissions] #4265 autogen-5.17.4-1

Jack Howarth — 2013-05-22T22:28:54

Patch to place linked libraries on LIBS after pre-existing LIBS.


Attachment: autogen.patch (1.2 kB; application/octet-stream)


---

** [package-submissions:#4265] autogen-5.17.4-1**

**Status:** open
**Created:** Tue May 21, 2013 07:59 PM UTC by Jack Howarth
**Last Updated:** Tue May 21, 2013 07:59 PM UTC
**Owner:** David Fang

The attached packaging updates autogen to the latest 5.17.4 release. It uses --disable-nls to prevent the building of nls support in libopts (which is the behavior of the current release). This is required to avoid testsuite failures due to unresolved symbols for "_libintl_dgettext and _libintl_gettext until we can pinpoint where the linkage problem in the testsuite. Also added autogen.patch and appended LIBS="-L%p/lib" to configure in order to eliminate a failure in the getopt.test. Tested with 'fink -m' on x86_64-apple-darwin12.


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[fink:package-submissions] #3829llvm-clang/llvm-gcc42/dragonegg-gcc 2.7-1

Hanspeter Niederstrasser — 2013-05-21T20:14:47

Closed as noted by submitter.


---

** [package-submissions:#3829] llvm-clang/llvm-gcc42/dragonegg-gcc 2.7-1**

**Status:** closed-fixed
**Labels:** Updated Version of Existing 
**Created:** Thu Apr 29, 2010 02:13 AM UTC by Jack Howarth
**Last Updated:** Thu Apr 29, 2010 02:13 AM UTC
**Owner:** nobody

The attached packaging includes updates to the new llvm 2.7 releases of...

1\) A llvm-clang-2.7-1 package to replace the previous llvm packaging. This provides both llvm and clang since the latter must be built within the llvm source tree.
2\) An updated llvm-gcc42-2.7.1 package.
3\) A new dragonegg-gcc package to provide the dragonegg compiler plugin for gcc45 and later as well as compiler wrapper scripts to automate its use.


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[fink:package-submissions] #3829llvm-clang/llvm-gcc42/dragonegg-gcc 2.7-1

Hanspeter Niederstrasser — 2013-05-21T20:14:47

- **status**: open --> closed-fixed



---

** [package-submissions:#3829] llvm-clang/llvm-gcc42/dragonegg-gcc 2.7-1**

**Status:** closed-fixed
**Labels:** Updated Version of Existing 
**Created:** Thu Apr 29, 2010 02:13 AM UTC by Jack Howarth
**Last Updated:** Thu Apr 29, 2010 02:13 AM UTC
**Owner:** nobody

The attached packaging includes updates to the new llvm 2.7 releases of...

1\) A llvm-clang-2.7-1 package to replace the previous llvm packaging. This provides both llvm and clang since the latter must be built within the llvm source tree.
2\) An updated llvm-gcc42-2.7.1 package.
3\) A new dragonegg-gcc package to provide the dragonegg compiler plugin for gcc45 and later as well as compiler wrapper scripts to automate its use.


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[fink:package-submissions] #4210mysql-unified-5.0.96-1

Hanspeter Niederstrasser — 2013-05-21T20:14:38

- **status**: open --> closed-fixed



---

** [package-submissions:#4210] mysql-unified-5.0.96-1**

**Status:** closed-fixed
**Labels:** copy to 10.7 tree 
**Created:** Fri Sep 28, 2012 03:34 AM UTC by Jack Howarth
**Last Updated:** Mon Oct 01, 2012 05:56 PM UTC
**Owner:** nobody

The attached packaging is a first attempt at building mysql-unified-5.0.45 with clang. The resulting build doesn't completely pass InfoTest but neither does the current build against llvm-gcc.


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[fink:package-submissions] #4210mysql-unified-5.0.96-1

Hanspeter Niederstrasser — 2013-05-21T20:14:38

Closed as noted by submitter.


---

** [package-submissions:#4210] mysql-unified-5.0.96-1**

**Status:** closed-fixed
**Labels:** copy to 10.7 tree 
**Created:** Fri Sep 28, 2012 03:34 AM UTC by Jack Howarth
**Last Updated:** Mon Oct 01, 2012 05:56 PM UTC
**Owner:** nobody

The attached packaging is a first attempt at building mysql-unified-5.0.45 with clang. The resulting build doesn't completely pass InfoTest but neither does the current build against llvm-gcc.


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[fink:package-submissions] #4247 apbs-1.4.0-1

Hanspeter Niederstrasser — 2013-05-21T20:14:24

- **status**: open --> closed-accepted
- **Group**:  --> Added_to_Fink



---

** [package-submissions:#4247] apbs-1.4.0-1**

**Status:** closed-accepted
**Labels:** Updated Version of Existing 
**Created:** Sun Mar 03, 2013 03:14 AM UTC by Jack Howarth
**Last Updated:** Sun Mar 03, 2013 03:14 AM UTC
**Owner:** William Scott

The new apbs 1.4.0 release switches their build to cmake-only. The attached packaging for apbs 1.4.0 implements
that change. The python support is left disabled as upstream hasn't implemented the ability to detect non-system
python releases yet \(and isn't required to use apbs with pymol anyway\). Upstream has removed the fortran code from
apbs and so clang is now used for the package build. Tested on x86\_64-apple-darwin12 with 'fink -m' and tested the
installed apbs with apbs-tools inside of pymol. 

Note that the -dev split-off is also removed because upstream hash't implemented soversioning for their shared libraries
so it is unsafe to encourage their use until upstream gets serious

[fink:package-submissions] #4247 apbs-1.4.0-1

Hanspeter Niederstrasser — 2013-05-21T20:14:25

Closed as noted by submitter.


---

** [package-submissions:#4247] apbs-1.4.0-1**

**Status:** closed-accepted
**Labels:** Updated Version of Existing 
**Created:** Sun Mar 03, 2013 03:14 AM UTC by Jack Howarth
**Last Updated:** Sun Mar 03, 2013 03:14 AM UTC
**Owner:** William Scott

The new apbs 1.4.0 release switches their build to cmake-only. The attached packaging for apbs 1.4.0 implements
that change. The python support is left disabled as upstream hasn't implemented the ability to detect non-system
python releases yet \(and isn't required to use apbs with pymol anyway\). Upstream has removed the fortran code from
apbs and so clang is now used for the package build. Tested on x86\_64-apple-darwin12 with 'fink -m' and tested the
installed apbs with apbs-tools inside of pymol. 

Note that the -dev split-off is also removed because upstream hash't implemented soversioning for their shared libraries
so it is unsafe to encourage their use until upstream gets serious about API standardization in those. 


--

[fink:package-submissions] #4255 scipy-py-0.11.0-1

Hanspeter Niederstrasser — 2013-05-21T20:13:39

- **status**: open --> closed-out-of-date
- **Group**:  --> Added_to_Fink



---

** [package-submissions:#4255] scipy-py-0.11.0-1**

**Status:** closed-out-of-date
**Labels:** Updated Revision of Existing 
**Created:** Fri Apr 05, 2013 08:06 PM UTC by Jack Howarth
**Last Updated:** Tue Apr 09, 2013 07:32 AM UTC
**Owner:** Jack Howarth

The attached packaging...

1\) Updates scipy to the 0.11.0 release
2\) Adds \(&gt;= 4.0.2-2\) to the BuildDepends on suitesparse and Depends on suitesparse-shlibs to handle the new suitesparse shlibs
3\) Switch the build from gcc47 to gcc48
4\) Removes the scipy-py.patch which isn't needed by 0.11.0
5\) Adds a InfoTest modelled after the check phase in Fedora

The previously missing InfoTest shows that this package needs some additional work. We get...

Ran 5481 tests in 77.895s

FAILED \(KNOWNFAIL=13, SKIP=31, errors=1, failures=72\)

on x86\_64-apple-darwin12 compared to 

Ran 6184 tests in 687.289s

OK \(KNOWNFAIL=17, SKIP=33\)

for the same fedora scipy 0.11.0 package bui

[fink:package-submissions] #4255 scipy-py-0.11.0-1

Hanspeter Niederstrasser — 2013-05-21T20:13:39

Closed as noted by submitter (superseded by later item).


---

** [package-submissions:#4255] scipy-py-0.11.0-1**

**Status:** closed-out-of-date
**Labels:** Updated Revision of Existing 
**Created:** Fri Apr 05, 2013 08:06 PM UTC by Jack Howarth
**Last Updated:** Tue Apr 09, 2013 07:32 AM UTC
**Owner:** Jack Howarth

The attached packaging...

1\) Updates scipy to the 0.11.0 release
2\) Adds \(&gt;= 4.0.2-2\) to the BuildDepends on suitesparse and Depends on suitesparse-shlibs to handle the new suitesparse shlibs
3\) Switch the build from gcc47 to gcc48
4\) Removes the scipy-py.patch which isn't needed by 0.11.0
5\) Adds a InfoTest modelled after the check phase in Fedora

The previously missing InfoTest shows that this package needs some additional work. We get...

Ran 5481 tests in 77.895s

FAILED \(KNOWNFAIL=13, SKIP=31, errors=1, failures=72\)

on x86\_64-apple-darwin12 compared to 

Ran 6184 tests in 687.289s

OK \(KNOWNFAIL=17, SKIP=33\)

for the same fedora scipy 0.11.0 package built on x86\_64 Fedo

[fink:package-submissions] #4256 numpy-py-1.7.1-1

Hanspeter Niederstrasser — 2013-05-21T20:13:25

Closed as noted by submitter.


---

** [package-submissions:#4256] numpy-py-1.7.1-1**

**Status:** closed-accepted
**Labels:** Updated Version of Existing 
**Created:** Sun Apr 07, 2013 03:23 PM UTC by Jack Howarth
**Last Updated:** Sun Apr 07, 2013 03:23 PM UTC
**Owner:** Sebastien Maret

The attached packaging updates numpy-py to the latest upstream 1.7.1 release and adds the missing InfoTest.
Tested with 'fink -m' on darwin12.


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[fink:package-submissions] #4256 numpy-py-1.7.1-1

Hanspeter Niederstrasser — 2013-05-21T20:13:24

- **status**: open --> closed-accepted
- **Group**:  --> Added_to_Fink



---

** [package-submissions:#4256] numpy-py-1.7.1-1**

**Status:** closed-accepted
**Labels:** Updated Version of Existing 
**Created:** Sun Apr 07, 2013 03:23 PM UTC by Jack Howarth
**Last Updated:** Sun Apr 07, 2013 03:23 PM UTC
**Owner:** Sebastien Maret

The attached packaging updates numpy-py to the latest upstream 1.7.1 release and adds the missing InfoTest.
Tested with 'fink -m' on darwin12.


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[fink:package-submissions] #4265 autogen-5.17.4-1

Jack Howarth — 2013-05-21T19:59:59



---

** [package-submissions:#4265] autogen-5.17.4-1**

**Status:** open
**Created:** Tue May 21, 2013 07:59 PM UTC by Jack Howarth
**Last Updated:** Tue May 21, 2013 07:59 PM UTC
**Owner:** David Fang

The attached packaging updates autogen to the latest 5.17.4 release. It uses --disable-nls to prevent the building of nls support in libopts (which is the behavior of the current release). This is required to avoid testsuite failures due to unresolved symbols for "_libintl_dgettext and _libintl_gettext until we can pinpoint where the linkage problem in the testsuite. Also added autogen.patch and appended LIBS="-L%p/lib" to configure in order to eliminate a failure in the getopt.test. Tested with 'fink -m' on x86_64-apple-darwin12.


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[fink:bugs] #850 xemacs movemail needs chrgp, setgid

Hanspeter Niederstrasser — 2013-05-21T19:45:59

- **Group**: 10.2-gcc3.3 --> Any_OS_X



---

** [bugs:#850] xemacs movemail needs chrgp, setgid**

**Status:** open
**Labels:** Package: Other problem 
**Created:** Wed Oct 08, 2003 02:55 PM UTC by A K Bressen
**Last Updated:** Tue May 21, 2013 07:43 PM UTC
**Owner:** Jeff Whitaker

Hi--

/sw/lib/xemacs-21.4.9/powerpc-apple-darwin6.6/movemail
installed as group admin and without the setgid bit set,
and failed to be able to get local system mail when 
called by gnus from inside of xemacs. 

I chgrp'd it to mail and flipped the setgid bit, and now 
it works. It is using dotfile locking by default on
the mailboxes; I hope that is what Apple Sendmail
uses... someone should probably verify this and then
change the package...

I'm using xemacs from Fink.
Packages xemacs21.4.9-3, 
with xemacs-base-pkg 1.71-1, xemacs-efs-pkg 1.29-1.
gnus 5.10.2.

Error message was
movemail: Permission denied for
/private/var/mail/EnRR2In--see
source file lib-src/movemail.c \(1 return\). Continue?


\--best
\--akb



---

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